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[172586_at]

Description C56E10.2 /REP_DB=WormBase Gene ID /WP=CE04280 /TR=Q18894 /GB=AAA81155.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 15.3
(-1.2)
A 		1.3
(-3)
A 		0.9
(-3)
A 		49.4
(3)
P 		49
B 14.8
(3)
A 		0.6
(-3)
A 		2.5
(-2.2)
A 		0.8
(-2.9)
A 		14
C 12.2
(-1.9)
A 		0.5
(-3)
A 		1
(-3)
A 		64.2
(3)
M 		64
avr 14.1
(-0.9) 		0.8
(-3) 		1.5
(-2.9) 		38.1
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 8.4
(-1.1)
A 		21.9
(2.9)
A 		22.1
(3)
A 		3
(-2.8)
A 		3.3
(-2.7)
A 		2.2
(-3)
A 		20
B 19.2
(0.2)
A 		31.1
(2.2)
P 		35.6
(3)
P 		8.4
(-1.7)
A 		12.4
(-1)
A 		1
(-3)
A 		35
C 2.1
(-2.6)
A 		19.5
(3)
A 		16.8
(2.1)
A 		0.9
(-3)
A 		14.3
(1.3)
A 		1.1
(-2.9)
A 		19
avr 9.9
(-0.8) 		24.2
(2.8) 		24.8
(3) 		4.1
(-2.3) 		10
(-0.8) 		1.4
(-3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 5.6
(1.6)
A 		0.3
(-2.9)
A 		0.2
(-3)
A 		7.2
(3)
P 		7
B 4.7
(3)
A 		0.2
(-3)
A 		0.6
(-2.5)
A 		0.2
(-3)
A 		5
C 4
(-0.8)
A 		0.2
(-3)
A 		0.3
(-2.9)
A 		10.8
(3)
M 		11
avr 4.8
(1.7) 		0.2
(-3) 		0.4
(-2.8) 		6.1
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.5
(-2.2)
A 		7.8
(3)
A 		4.8
(0.5)
A 		0.8
(-2.8)
A 		1
(-2.6)
A 		0.5
(-3)
A 		7
B 6.7
(0.8)
A 		10.3
(3)
P 		8.6
(2)
P 		2.2
(-1.9)
A 		5
(-0.2)
A 		0.4
(-3)
A 		10
C 0.8
(-2.4)
A 		5.9
(3)
A 		4.3
(1.3)
A 		0.2
(-3)
A 		4.6
(1.6)
A 		0.4
(-2.8)
A 		6
avr 3
(-0.9) 		8
(3) 		5.9
(1.3) 		1.1
(-2.4) 		3.5
(-0.6) 		0.4
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172586_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16112
Sequence Type Exemplar sequence
Representative Public ID C56E10.2 NCBI
Target Description C56E10.2 /REP_DB=WormBase Gene ID /WP=CE04280 /TR=Q18894 /GB=AAA81155.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076716(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076716 NCBI Caenorhabditis elegans C56E10.3 (C56E10.3) mRNA, complete cds. 11/11 A 
GENEFINDER00000019182 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6645619:6651652:1 11/11 None
C56E10.3 ENSEMBL cdna:known chromosome:CEL140:X:6645609:6651708:1 gene:C56E10.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6651407-6651652(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C56E10.3
Entrez Gene 183863 Entrez gene
SwissProt Q18893 EMBL-EBI
WormBase CE30922 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81155 Hypothetical protein C56E10.3 [Caenorhabditis elegans] ref|NP_509117.2| C56E10.3 [Caenorhabditis elegans] 0.0
blast AAA81155 Hypothetical protein C56E10.3 [Caenorhabditis elegans] ref|NP_509117.2| C56E10.3 [Caenorhabditis elegans] 1.0E-160
blast T15855 hypothetical protein C56E10.3 - Caenorhabditis elegans 1.0E-140
blast CAE65767 Hypothetical protein CBG10856 [Caenorhabditis briggsae] 2.0E-96
blast CAE65767 Hypothetical protein CBG10856 [Caenorhabditis briggsae] 3.0E-96
Sequence
Target Sequence 
>C. ELEGANS:172586_AT
ggaaaactatgcatcattagcaaatggacagttacgaacaaatcttgcgctgttgaaacc
ctatgatgaggagtatcaggaattcgagagcctagtggaaacaaaaaagcagttaaacag
tcaactcgcgagacaagagtttaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAAACTATGCATCATTAGCAAAT 113 529 15 Antisense
ATTAGCAAATGGACAGTTACGAACA 274 11 30 Antisense
GACAGTTACGAACAAATCTTGCGCT 177 365 41 Antisense
AATCTTGCGCTGTTGAAACCCTATG 351 169 55 Antisense
TGCGCTGTTGAAACCCTATGATGAG 483 583 60 Antisense
GAAACCCTATGATGAGGAGTATCAG 104 357 69 Antisense
GAGGAGTATCAGGAATTCGAGAGCC 60 405 82 Antisense
GGAATTCGAGAGCCTAGTGGAAACA 312 531 93 Antisense
AGCAGTTAAACAGTCAACTCGCGAG 200 77 122 Antisense
TAAACAGTCAACTCGCGAGACAAGA 124 639 128 Antisense
GTCAACTCGCGAGACAAGAGTTTAA 71 465 134 Antisense
Sequence Source Affymetrix Proprietary Database