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[172583_x_at]

Description F54D10.2 /REP_DB=WormBase Gene ID /WP=CE19452 /TR=Q9TZ85 /GB=AAC68783.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 06      4grp_highest_8_8 > 53      4grp_high_8_8 > 17      6grp_highest_nonorm > 40      6grp_total > 06      4grp_total > 31      6grp_highest_sub > De      6grp_total_sub > Decrease      6grp_high1_sub > De      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1237
1 2 3 4 range
A 1363.6
(3)
P 		152.3
(-3)
P 		176.7
(-2.9)
P 		829.2
(0.4)
P 		1211
B 1126.3
(3)
P 		180.7
(-2.7)
P 		126.3
(-3)
P 		765.6
(0.8)
P 		1000
C 1352
(3)
P 		180.2
(-2.8)
P 		144.3
(-3)
P 		692.5
(-0.3)
P 		1208
avr 1280.6
(3) 		171.1
(-2.9) 		149.1
(-3) 		762.4
(0.3) 		1132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1533
1 2 3 4 5 6 range
A 819.3
(3)
P 		825.3
(3)
P 		504.2
(0.3)
P 		246.1
(-1.8)
P 		215
(-2.1)
P 		102.2
(-3)
P 		723
B 1241.9
(3)
P 		819.8
(0.7)
P 		536.1
(-0.9)
P 		252.3
(-2.5)
P 		339.1
(-2)
P 		159.1
(-3)
P 		1083
C 1635.1
(3)
P 		620.6
(-1.2)
P 		265.6
(-2.6)
P 		281.3
(-2.6)
P 		234.6
(-2.8)
P 		174.5
(-3)
P 		1461
avr 1232.1
(3) 		755.2
(0.4) 		435.3
(-1.4) 		259.9
(-2.4) 		262.9
(-2.4) 		145.3
(-3) 		1087
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 467
1 2 3 4 range
A 496.5
(3)
P 		33.1
(-3)
P 		46.2
(-2.8)
P 		121.4
(-1.9)
P 		463
B 359.2
(3)
P 		44.6
(-2.7)
P 		29.3
(-3)
P 		163.1
(-0.6)
P 		330
C 447.6
(3)
P 		51.8
(-3)
P 		50.3
(-3)
P 		116.8
(-2)
P 		397
avr 434.4
(3) 		43.2
(-3) 		41.9
(-3) 		133.8
(-1.6) 		393

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 581
1 2 3 4 5 6 range
A 151
(-0.2)
P 		293.5
(3)
P 		109.8
(-1.1)
P 		62.4
(-2.2)
P 		64.9
(-2.1)
P 		24.9
(-3)
P 		269
B 432.1
(3)
P 		272.9
(0.4)
P 		130.2
(-1.9)
P 		66.8
(-2.9)
P 		137.8
(-1.7)
P 		59.3
(-3)
P 		373
C 606.1
(3)
P 		189.4
(-1.5)
P 		67.6
(-2.9)
P 		56.6
(-3)
P 		75.9
(-2.8)
P 		58.4
(-3)
P 		550
avr 396.4
(3) 		251.9
(0.5) 		102.5
(-2.1) 		61.9
(-2.8) 		92.9
(-2.2) 		47.5
(-3) 		349
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172583_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5189
Sequence Type Exemplar sequence
Representative Public ID F54D10.2 NCBI
Target Description F54D10.2 /REP_DB=WormBase Gene ID /WP=CE19452 /TR=Q9TZ85 /GB=AAC68783.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062259(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062259 NCBI Caenorhabditis elegans F54D10.2 (F54D10.2) mRNA, complete cds. 11/11 None
F54D10.2 ENSEMBL cdna:known chromosome:CEL140:II:3816509:3818227:1 gene:F54D10.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_064901 3/11 Cross Hyb Matching Probes A 
SNAP00000007701 3/11 Cross Hyb Matching Probes None
GENEFINDER00000007716 3/11 Cross Hyb Matching Probes None
T12B5.11 3/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3816928-3818156(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F54D10.2
Entrez Gene 173727 Entrez gene
SwissProt Q9TZ85 EMBL-EBI
WormBase CE32677 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68783 Hypothetical protein F54D10.2 [Caenorhabditis elegans] ref|NP_494660.2| F54D10.2 [Caenorhabditis elegans] 1.0E-110
blast AAC68938 Hypothetical protein T12B5.11 [Caenorhabditis elegans] ref|NP_497302.1| T12B5.11 [Caenorhabditis elegans] 2.0E-85
blast AAC04395 Hypothetical protein C17B7.11 [Caenorhabditis elegans] ref|NP_503929.1| C17B7.11 [Caenorhabditis elegans] 1.0E-39
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.0E-63
Sequence
Target Sequence 
>C. ELEGANS:172583_X_AT
tgaacacgagaacacgagaacacgaacgagaacgagacgagagagagacgagagagaatc
atttattgaaattttgaaatcagttaaatgtattcacgtgaagacaataaaacttgacaa
tttctcattcaataatgccatcactattctccagtattgtaacaccaaagttctggagaa
cattgaattttggataacccatataaacaatcagtttgaaaatattgctcatctggatca
atggaaatgtgcgaaaaaatgcagtctgcttggtgataagcttgaaagtagactaattga
tcatctgttccactttcaatggttccagatccaactggacgactttccaacatatattgc
aatcaaaattagagatgatctaatgagaagaagtacatttcaaggttgccgtataaattg
tgacaaatcaaagtcaaatccaattgaaattgcaaaagtgttcaaacctgactatgctgg
cggcaatgagtttctaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAACACGAGAACACGAGAACACGA 585 571 243 Antisense
AACACGAACGAGAACGAGACGAGAG 182 137 261 Antisense
TCAATAATGCCATCACTATTCTCCA 637 633 371 Antisense
CTATTCTCCAGTATTGTAACACCAA 563 223 386 Antisense
GAACATTGAATTTTGGATAACCCAT 632 349 420 Antisense
GTAGACTAATTGATCATCTGTTCCA 261 457 530 Antisense
ATCTGTTCCACTTTCAATGGTTCCA 706 33 545 Antisense
GATCCAACTGGACGACTTTCCAACA 575 415 570 Antisense
CAAGGTTGCCGTATAAATTGTGACA 566 183 643 Antisense
AAGTGTTCAAACCTGACTATGCTGG 126 159 698 Antisense
ATGCTGGCGGCAATGAGTTTCTAAT 148 41 716 Antisense
Sequence Source Affymetrix Proprietary Database