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[172582_x_at]

Description Y39A1A.5B /REP_DB=WormBase Gene ID /WP=CE19124 /TR=Q9XX20 /GB=CAA21020.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 67      4grp_high_8_8 > 11      6grp_highest_nonorm > 93      6grp_total > 68      4grp_total > 13      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 453
1 2 3 4 range
A 407
(1.9)
P 		296
(-1.6)
P 		252.9
(-3)
P 		440.4
(3)
P 		188
B 318.6
(-1)
P 		248.5
(-2)
P 		169.8
(-3)
P 		623
(3)
P 		453
C 435.7
(3)
P 		220.2
(-3)
M 		231.5
(-2.7)
P 		400.1
(2)
P 		216
avr 387.1
(0.8) 		254.9
(-2.2) 		218.1
(-3) 		487.8
(3) 		270

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 373
1 2 3 4 5 6 range
A 327.4
(-2.4)
P 		379.4
(-1)
P 		348.2
(-1.8)
P 		338.3
(-2.1)
P 		303.6
(-3)
P 		532.1
(3)
P 		229
B 370.2
(-1.3)
P 		347.5
(-1.8)
P 		286.7
(-3)
P 		338.9
(-1.9)
P 		399.5
(-0.7)
P 		583.4
(3)
P 		297
C 485.7
(0)
P 		309.9
(-3)
P 		352.9
(-2.3)
P 		330.2
(-2.7)
P 		382.7
(-1.8)
P 		659.7
(3)
P 		350
avr 394.4
(-1.5) 		345.6
(-2.6) 		329.3
(-3) 		335.8
(-2.9) 		361.9
(-2.3) 		591.7
(3) 		262
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 148.2
(3)
P 		64.3
(-3)
P 		66.1
(-2.9)
P 		64.5
(-3)
P 		84
B 101.6
(1)
P 		61.4
(-1.6)
P 		39.3
(-3)
P 		132.8
(3)
P 		94
C 144.2
(3)
P 		63.3
(-3)
M 		80.7
(-1.7)
P 		67.5
(-2.7)
P 		81
avr 131.3
(3) 		63
(-2.9) 		62
(-3) 		88.3
(-0.7) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 60.4
(-3)
P 		134.9
(3)
P 		75.8
(-1.8)
P 		85.8
(-1)
P 		91.6
(-0.5)
P 		129.5
(2.6)
P 		75
B 128.8
(-0.6)
P 		115.7
(-1.1)
P 		69.6
(-3)
P 		89.8
(-2.2)
P 		162.3
(0.8)
P 		217.5
(3)
P 		148
C 180
(1.4)
P 		94.6
(-1.9)
P 		89.8
(-2.1)
P 		66.4
(-3)
P 		123.8
(-0.8)
P 		220.9
(3)
P 		155
avr 123.1
(-0.6) 		115.1
(-1) 		78.4
(-3) 		80.7
(-2.9) 		125.9
(-0.4) 		189.3
(3) 		111
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172582_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7052
Sequence Type Exemplar sequence
Representative Public ID Y39A1A.5B NCBI
Target Description Y39A1A.5B /REP_DB=WormBase Gene ID /WP=CE19124 /TR=Q9XX20 /GB=CAA21020.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066938(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066938 NCBI Caenorhabditis elegans Y39A1A.24 (Y39A1A.24) mRNA, complete cds. 11/11 A 
SNAP00000012906 ENSEMBL cdna:SNAP chromosome:CEL140:III:10613792:10614762:1 11/11 None
GENEFINDER00000012942 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10613792:10614762:1 11/11 None
Y39A1A.24 ENSEMBL cdna:known chromosome:CEL140:III:10613444:10614807:1 gene:Y39A1A.24 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10613787-10614758(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39A1A.24
Entrez Gene 3564902 Entrez gene
SwissProt Q9XX20 EMBL-EBI
WormBase CE19124 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21020 Hypothetical protein Y39A1A.24 [Caenorhabditis elegans] ref|NP_499339.1| Y39A1A.24 [Caenorhabditis elegans] 4.0E-55
blast T26732 hypothetical protein Y39A1A.5a - Caenorhabditis elegans 2.0E-49
blast CAE71439 Hypothetical protein CBG18350 [Caenorhabditis briggsae] 4.0E-33
Sequence
Target Sequence 
>C. ELEGANS:172582_X_AT
atgctactcgaattggctttacttggacttgtcgcctacctgctgctcacctggcatcgt
aaagaagtcgagaagggtggcgaaggactcggcgcggctggtccaattctcgaagaaatg
gaggcacttgtgctcaaaattgcgagcatcttcaagaaacaggcggccggaaataccgta
tccgcatcgaaaagaggatcgacacagagtccagtcatccgaacagctgaagcatcgact
cagagagcatcgccggcgattgcacaagttgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCTACTCGAATTGGCTTTACTTG 261 43 13 Antisense
GGCTTTACTTGGACTTGTCGCCTAC 585 535 27 Antisense
TGCTGCTCACCTGGCATCGTAAAGA 142 583 53 Antisense
AGAAGGGTGGCGAAGGACTCGGCGC 120 75 83 Antisense
CGGCTGGTCCAATTCTCGAAGAAAT 42 243 107 Antisense
GCATCTTCAAGAAACAGGCGGCCGG 103 309 158 Antisense
GCGGCCGGAAATACCGTATCCGCAT 581 291 175 Antisense
GATCGACACAGAGTCCAGTCATCCG 513 417 209 Antisense
GTCCAGTCATCCGAACAGCTGAAGC 22 477 221 Antisense
AGCATCGACTCAGAGAGCATCGCCG 661 77 243 Antisense
ATCGCCGGCGATTGCACAAGTTGAA 34 37 261 Antisense
Sequence Source Affymetrix Proprietary Database