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[172581_s_at]

Description F32D8.11A /REP_DB=WormBase Gene ID /WP=CE23696 /TR=Q9U3H2 /GB=CAB54237.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 22      4grp_high_8_8 > 37      6grp_highest_nonorm > 90      6grp_total > 22      4grp_total > 50      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 87.6
(1.3)
P 		80.6
(0.4)
P 		101.2
(3)
P 		53.2
(-3)
A 		48
B 69.1
(-2.5)
P 		130.4
(3)
P 		95.3
(-0.1)
P 		63.3
(-3)
P 		67
C 117.3
(-3)
P 		130.1
(0.5)
P 		118.5
(-2.7)
P 		139.4
(3)
P 		22
avr 91.3
(-1.7) 		113.7
(3) 		105
(1.2) 		85.3
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 107.1
(-0.7)
P 		153
(1.5)
P 		185.3
(3)
P 		116.8
(-0.3)
P 		145
(1.1)
P 		59.8
(-3)
P 		126
B 220.6
(3)
P 		168.7
(1)
P 		120.7
(-0.9)
P 		133
(-0.4)
P 		157.3
(0.5)
P 		65.7
(-3)
P 		155
C 177.1
(2.4)
P 		172.6
(2.1)
P 		190.1
(3)
P 		144.9
(0.8)
P 		105.7
(-1.1)
P 		67.4
(-3)
P 		123
avr 168.3
(3) 		164.8
(2.8) 		165.4
(2.8) 		131.6
(0.9) 		136
(1.1) 		64.3
(-3) 		104
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 31.9
(3)
P 		17.5
(-0.6)
P 		26.5
(1.7)
P 		7.8
(-3)
A 		24
B 22
(-0.3)
P 		32.2
(3)
P 		22.1
(-0.2)
P 		13.5
(-3)
P 		19
C 38.8
(2.2)
P 		37.4
(1.7)
P 		41.3
(3)
P 		23.5
(-3)
P 		18
avr 30.9
(3) 		29
(2.3) 		30
(2.7) 		14.9
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 19.8
(-2.2)
P 		54.4
(3)
P 		40.3
(0.9)
P 		29.6
(-0.7)
P 		43.8
(1.4)
P 		14.6
(-3)
P 		40
B 76.8
(3)
P 		56.2
(0.6)
P 		29.3
(-2.4)
P 		35.2
(-1.8)
P 		63.9
(1.5)
P 		24.5
(-3)
P 		52
C 65.7
(3)
P 		52.7
(1.2)
P 		48.4
(0.6)
P 		29.1
(-2.1)
P 		34.2
(-1.4)
P 		22.6
(-3)
P 		43
avr 54.1
(2.9) 		54.4
(3) 		39.3
(0.3) 		31.3
(-1.1) 		47.3
(1.7) 		20.6
(-3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172581_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14541
Sequence Type Exemplar sequence
Representative Public ID F32D8.11A NCBI
Target Description F32D8.11A /REP_DB=WormBase Gene ID /WP=CE23696 /TR=Q9U3H2 /GB=CAB54237.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028702(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028702 NCBI Caenorhabditis elegans F32D8.12b (F32D8.12) mRNA, complete cds. 11/11 None
SNAP00000041026 ENSEMBL cdna:SNAP chromosome:CEL140:V:10890577:10890831:-1 11/11 None
GENEFINDER00000041049 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10890577:10890831:-1 11/11 None
F32D8.12b.3 ENSEMBL cdna:known chromosome:CEL140:V:10890460:10893580:-1 gene:F32D8.12 11/11 None
F32D8.12b.4 ENSEMBL cdna:known chromosome:CEL140:V:10890475:10893580:-1 gene:F32D8.12 11/11 None
F32D8.12c.2 ENSEMBL cdna:known chromosome:CEL140:V:10890487:10893583:-1 gene:F32D8.12 11/11 None
F32D8.12c.3 ENSEMBL cdna:known chromosome:CEL140:V:10890487:10893393:-1 gene:F32D8.12 11/11 None
F32D8.12c.4 ENSEMBL cdna:known chromosome:CEL140:V:10890487:10893580:-1 gene:F32D8.12 11/11 None
F32D8.12c.1 ENSEMBL cdna:known chromosome:CEL140:V:10890487:10893614:-1 gene:F32D8.12 11/11 None
F32D8.12b.1 ENSEMBL cdna:known chromosome:CEL140:V:10890533:10893583:-1 gene:F32D8.12 11/11 A 
F32D8.12b.2 ENSEMBL cdna:known chromosome:CEL140:V:10890533:10893593:-1 gene:F32D8.12 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179506 3 1 NM_001028702 172581_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10890576-10890831(-) 100.0 100.0
Public Domain and Genome References
Ensembl F32D8.12
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE54902 Hypothetical protein F32D8.12b [Caenorhabditis elegans] ref|NP_001023873.1| F32D8.12b [Caenorhabditis elegans] 0.0
blast CAD54138 Hypothetical protein F32D8.12a [Caenorhabditis elegans] ref|NP_001023872.1| F32D8.12a [Caenorhabditis elegans] 0.0
blast CAE64909 Hypothetical protein CBG09729 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006094 EMBL-EBI FAD linked oxidase, N-terminal 4.6E-10
Pfam IPR006094 EMBL-EBI FAD linked oxidase, N-terminal 1.2E-26
Pfam IPR004113 EMBL-EBI FAD linked oxidase, C-terminal 1.0E-85
Pfam IPR006094 EMBL-EBI FAD linked oxidase, N-terminal 1.2E-26
Pfam IPR004113 EMBL-EBI FAD linked oxidase, C-terminal 1.0E-85
Sequence
Target Sequence 
>C. ELEGANS:172581_S_AT
tgtttttgtatttcactgtgcttgcattttgtgaaattcaatgtgtgccattattcaaag
gtaacatttttttgattactttcatacttttaaagcaaataattatttcagatattgact
ataagctctatgaatatgacactggagttgcggtggattctgtttttgaaatagttccag
atacgtcaaaaaaagtggcttccatcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTTTTGTATTTCACTGTGCTTGC 561 561 26 Antisense
GTATTTCACTGTGCTTGCATTTTGT 592 453 33 Antisense
CTGTGCTTGCATTTTGTGAAATTCA 20 241 41 Antisense
GAAATTCAATGTGTGCCATTATTCA 614 363 58 Antisense
GATATTGACTATAAGCTCTATGAAT 16 427 136 Antisense
TAAGCTCTATGAATATGACACTGGA 379 637 147 Antisense
ATGACACTGGAGTTGCGGTGGATTC 382 45 161 Antisense
CTGGAGTTGCGGTGGATTCTGTTTT 483 239 167 Antisense
GGATTCTGTTTTTGAAATAGTTCCA 474 507 180 Antisense
GAAATAGTTCCAGATACGTCAAAAA 427 361 193 Antisense
GTCAAAAAAAGTGGCTTCCATCGGA 423 463 210 Antisense
Sequence Source Affymetrix Proprietary Database