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[172580_at]

Description F33D11.8 /REP_DB=WormBase Gene ID /WP=CE09898 /TR=O44779 /GB=AAB96701.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 04      4grp_high_8_8 > 27      6grp_total > 05      4grp_total > 29      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 169
1 2 3 4 range
A 185.9
(2.6)
P 		192.9
(3)
P 		94.1
(-3)
A 		111.4
(-1.9)
P 		99
B 170
(-1.2)
P 		130.7
(-3)
A 		173.4
(-1.1)
P 		263
(3)
P 		132
C 214.3
(2.8)
P 		216.6
(3)
P 		129.9
(-3)
P 		176.1
(0.2)
P 		87
avr 190.1
(3) 		180.1
(2) 		132.5
(-3) 		183.5
(2.3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 214
1 2 3 4 5 6 range
A 256.5
(3)
P 		221.7
(1.6)
P 		206.7
(1)
P 		128.4
(-2.2)
P 		145.2
(-1.6)
P 		110
(-3)
M 		147
B 207.9
(-0.4)
P 		315.4
(3)
P 		270.2
(1.6)
P 		127.8
(-3)
P 		219.7
(-0.1)
P 		193.1
(-0.9)
P 		188
C 270.3
(3)
P 		201
(0.5)
P 		114.6
(-2.5)
A 		155.3
(-1.1)
A 		254.8
(2.4)
P 		101.7
(-3)
P 		169
avr 244.9
(2.9) 		246
(3) 		197.2
(0.4) 		137.2
(-2.9) 		206.6
(0.9) 		134.9
(-3) 		111
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 67.7
(3)
P 		41.9
(-0)
P 		24.6
(-2)
A 		16.3
(-3)
P 		51
B 54.2
(2.5)
P 		32.3
(-3)
A 		40.2
(-1)
P 		56
(3)
P 		24
C 70.9
(3)
P 		62.3
(1.7)
P 		45.3
(-0.7)
P 		29.7
(-3)
P 		41
avr 64.3
(3) 		45.5
(-0.7) 		36.7
(-2.5) 		34
(-3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 47.3
(-0.6)
P 		78.9
(3)
P 		45
(-0.9)
P 		32.6
(-2.3)
P 		43.8
(-1)
P 		26.8
(-3)
M 		52
B 72.4
(0.2)
P 		105
(3)
P 		65.6
(-0.3)
P 		33.9
(-3)
P 		89.2
(1.7)
P 		72
(0.2)
P 		71
C 100.2
(3)
P 		61.3
(-0.3)
P 		29.2
(-3)
A 		31.2
(-2.8)
A 		82.4
(1.5)
P 		34
(-2.6)
P 		71
avr 73.3
(2) 		81.7
(3) 		46.6
(-1.3) 		32.6
(-3) 		71.8
(1.8) 		44.3
(-1.6) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172580_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1368
Sequence Type Exemplar sequence
Representative Public ID F33D11.8 NCBI
Target Description F33D11.8 /REP_DB=WormBase Gene ID /WP=CE09898 /TR=O44779 /GB=AAB96701.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059298
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059298 NCBI Caenorhabditis elegans F33D11.8 (F33D11.8) mRNA, complete cds. None
F33D11.8 ENSEMBL cdna:known chromosome:CEL140:I:5862437:5863183:-1 gene:F33D11.8 None
SNAP00000028957 ENSEMBL cdna:SNAP chromosome:CEL140:I:5862481:5863157:-1 None
GENEFINDER00000028973 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5862481:5863157:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5862480-5864219(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F33D11.8
Entrez Gene 185230 Entrez gene
SwissProt O44779 EMBL-EBI
WormBase CE29785 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB96701 Hypothetical protein F33D11.8 [Caenorhabditis elegans] ref|NP_491699.2| F33D11.8 [Caenorhabditis elegans] 1.0E-33
blast CAE60415 Hypothetical protein CBG04021 [Caenorhabditis briggsae] 5.0E-23
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491699.2 1 5-27
F33D11.8 1 5-27
SNAP00000028957 1 5-27
GENEFINDER00000028973 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:172580_AT
tggtcctcaaaaaagatttaggccaaaagaaatttctccgatcctacgatgatataaatc
aggaaagcatagctagaggatattttgctccacaacctgttgatgatgataatgcagata
acagaccaaagcgtggaattgatctactgaaacgtcgtgttgagataattgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGTCCTCAAAAAAGATTTAGGCCA 271 551 14 Antisense
GGCCAAAAGAAATTTCTCCGATCCT 316 543 34 Antisense
GAAATTTCTCCGATCCTACGATGAT 558 361 42 Antisense
TTCTCCGATCCTACGATGATATAAA 610 693 47 Antisense
GAGGATATTTTGCTCCACAACCTGT 460 401 89 Antisense
TATTTTGCTCCACAACCTGTTGATG 375 661 94 Antisense
ACAACCTGTTGATGATGATAATGCA 460 113 105 Antisense
AATGCAGATAACAGACCAAAGCGTG 617 165 124 Antisense
GACCAAAGCGTGGAATTGATCTACT 474 383 137 Antisense
ATTGATCTACTGAAACGTCGTGTTG 201 3 151 Antisense
GAAACGTCGTGTTGAGATAATTGAA 114 359 162 Antisense
Sequence Source Affymetrix Proprietary Database