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[172575_x_at]

Description C13A2.10 /REP_DB=WormBase Gene ID /WP=CE08121 /TR=O16872 /GB=AAB69882.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 10      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 2.7
(-3)
A 		2.5
(-3)
A 		3.5
(-2.8)
A 		38.3
(3)
A 		36
B 5.9
(-2.3)
A 		14.2
(-0.3)
A 		3.2
(-3)
A 		27.5
(3)
A 		24
C 1.1
(-3)
A 		1.5
(-2.9)
A 		2.5
(-2.7)
A 		31
(3)
A 		30
avr 3.2
(-3) 		6.1
(-2.4) 		3.1
(-3) 		32.3
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 164
1 2 3 4 5 6 range
A 1.6
(-3)
A 		3.1
(-2.9)
A 		11.2
(-2.6)
A 		166
(3)
P 		100.3
(0.6)
P 		2.3
(-3)
A 		164
B 3.6
(-2.9)
A 		2.5
(-3)
A 		3.5
(-2.9)
A 		87.9
(3)
P 		86.4
(2.9)
P 		2.4
(-3)
A 		86
C 3
(-3)
A 		3.7
(-2.9)
A 		4.3
(-2.9)
A 		86.6
(3)
P 		77.7
(2.4)
P 		15
(-2.1)
A 		84
avr 2.7
(-3) 		3.1
(-3) 		6.3
(-2.8) 		113.5
(3) 		88.1
(1.6) 		6.6
(-2.8) 		111
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1
(-2.4)
A 		0.5
(-3)
A 		0.9
(-2.5)
A 		5.6
(3)
A 		5
B 1.9
(-1.7)
A 		3.5
(0.2)
A 		0.8
(-3)
A 		5.9
(3)
A 		5
C 0.4
(-3)
A 		0.4
(-3)
A 		0.9
(-2.4)
A 		5.2
(3)
A 		5
avr 1.1
(-2.7) 		1.5
(-2.2) 		0.9
(-3) 		5.6
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 0.3
(-3)
A 		1.1
(-2.9)
A 		2.4
(-2.7)
A 		42.1
(3)
P 		30.3
(1.3)
P 		0.6
(-3)
A 		42
B 1.2
(-2.9)
A 		0.8
(-3)
A 		0.9
(-3)
A 		23.3
(0.9)
P 		35.1
(3)
P 		0.9
(-3)
A 		34
C 1.1
(-3)
A 		1.1
(-3)
A 		1.1
(-3)
A 		17.4
(1.1)
P 		25.1
(3)
P 		5
(-2)
A 		24
avr 0.9
(-3) 		1
(-3) 		1.5
(-2.9) 		27.6
(2.5) 		30.2
(3) 		2.2
(-2.7) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172575_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11500
Sequence Type Exemplar sequence
Representative Public ID C13A2.10 NCBI
Target Description C13A2.10 /REP_DB=WormBase Gene ID /WP=CE08121 /TR=O16872 /GB=AAB69882.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072447(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072447 NCBI Caenorhabditis elegans C13A2.10 (C13A2.10) mRNA, complete cds. 11/11 None
SNAP00000044270 ENSEMBL cdna:SNAP chromosome:CEL140:V:7276452:7277656:-1 10/11 None
GENEFINDER00000044277 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7276452:7277637:-1 11/11 None
C13A2.10 ENSEMBL cdna:known chromosome:CEL140:V:7276452:7277499:-1 gene:C13A2.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_072457 5/11 Cross Hyb Matching Probes A 
NM_072458 4/11 Cross Hyb Matching Probes A 
SNAP00000010038 4/11 Cross Hyb Matching Probes None
GENEFINDER00000010044 5/11 Cross Hyb Matching Probes None
GENEFINDER00000010046 4/11 Cross Hyb Matching Probes None
F07G11.2 5/11 Cross Hyb Matching Probes A 
F07G11.7 4/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7307381-7308389(+) 92.44 92.44
chrV:7276452-7277500(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C13A2.10
Entrez Gene 182557 Entrez gene
SwissProt O16872 EMBL-EBI
WormBase CE08121 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB69882 Hypothetical protein C13A2.10 [Caenorhabditis elegans] ref|NP_504848.1| C13A2.10 [Caenorhabditis elegans] 1.0E-161
blast AAB69882 Hypothetical protein C13A2.10 [Caenorhabditis elegans] ref|NP_504848.1| C13A2.10 [Caenorhabditis elegans] 1.0E-153
blast NP_504858 F07G11.2 [Caenorhabditis elegans] gb|AAG24049.1| Hypothetical protein F07G11.2 [Caenorhabditis elegans] 1.0E-134
blast NP_504858 F07G11.2 [Caenorhabditis elegans] gb|AAG24049.1| Hypothetical protein F07G11.2 [Caenorhabditis elegans] 1.0E-126
blast AAB69876 Hypothetical protein C13A2.4 [Caenorhabditis elegans] ref|NP_504850.1| C13A2.4 [Caenorhabditis elegans] 1.0E-104
Protein Domains
Database ID Description E-Value
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 4.3E-56
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 7.3E-51
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 4.3E-56
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000044270 1 19-41
GENEFINDER00000044277 1 29-46
Sequence
Target Sequence 
>C. ELEGANS:172575_X_AT
gaaccgctgacaatggttactcttggaattggacgtgatatccgagcagagctcagactg
aaagcgatgtaccctaacatagctttttacggagcggacccgggtgttgctgtgaacaaa
gatctatacgaaagcacgttgggtgggaaattctacaattatgcagttagtggacaaaac
ggtatacatatatccaaaatcttccttgaacgaaactttaaagtagatgcaactgaacac
attcgagccgattatttctttagaaaaatacttaataaaaacagaattgacattctttgg
atagacatcgaacaaaatgaatacggtattcttgagcaaatccatcagaatggaaagttg
gatcaggtcggcgtcaagatatgtcagatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACCGCTGACAATGGTTACTCTTG 455 345 295 Antisense
GGTTACTCTTGGAATTGGACGTGAT 503 505 309 Antisense
GGACGTGATATCCGAGCAGAGCTCA 532 523 325 Antisense
CTCAGACTGAAAGCGATGTACCCTA 351 229 346 Antisense
TGTACCCTAACATAGCTTTTTACGG 409 553 362 Antisense
GACCCGGGTGTTGCTGTGAACAAAG 93 379 391 Antisense
ATATCCAAAATCTTCCTTGAACGAA 373 21 484 Antisense
GATGCAACTGAACACATTCGAGCCG 182 413 520 Antisense
CATTCGAGCCGATTATTTCTTTAGA 186 217 534 Antisense
GGAAAGTTGGATCAGGTCGGCGTCA 401 527 646 Antisense
GGTCGGCGTCAAGATATGTCAGATG 405 503 660 Antisense
Sequence Source Affymetrix Proprietary Database