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[172574_x_at]

Description ZC395.11 /REP_DB=WormBase Gene ID /WP=CE01437 /TR=Q9GYF9 /GB=AAG00039.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 08      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 1.7
(-3)
A 		2.4
(-2.9)
A 		2.2
(-2.9)
A 		40.2
(3)
A 		39
B 3.1
(-2.4)
A 		1.5
(-3)
A 		16.6
(3)
A 		1.7
(-2.9)
A 		15
C 1.6
(-3)
A 		2.3
(-2.7)
A 		8.2
(-0.6)
A 		18.3
(3)
A 		17
avr 2.1
(-3) 		2.1
(-3) 		9
(-0.7) 		20.1
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.4
(-1.6)
A 		2.5
(0.9)
A 		3.4
(3)
A 		2
(-0.2)
A 		2.2
(0.2)
A 		0.8
(-3)
A 		3
B 1.5
(-1.4)
A 		4.3
(3)
A 		0.5
(-3)
A 		1.7
(-1.1)
A 		4.1
(2.7)
A 		1.6
(-1.3)
A 		4
C 1.9
(-2.3)
A 		2.8
(-1.6)
A 		8.3
(3)
A 		5.3
(0.5)
A 		1.1
(-3)
A 		1.6
(-2.6)
A 		7
avr 1.6
(-2.4) 		3.2
(1.1) 		4.1
(3) 		3
(0.6) 		2.5
(-0.4) 		1.3
(-3) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 0.6
(-2.9)
A 		0.5
(-3)
A 		0.6
(-2.9)
A 		5.9
(3)
A 		5
B 1
(-1.9)
A 		0.4
(-3)
A 		3.8
(3)
A 		0.4
(-3)
A 		3
C 0.5
(-3)
A 		0.7
(-2.5)
A 		2.9
(2.5)
A 		3.1
(3)
A 		3
avr 0.7
(-2.5) 		0.5
(-3) 		2.4
(1.4) 		3.1
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.3
(-2.1)
A 		0.9
(3)
A 		0.7
(1.3)
A 		0.5
(-0.4)
A 		0.7
(1.3)
A 		0.2
(-3)
A 		1
B 0.5
(-1.5)
A 		1.4
(1.9)
A 		0.1
(-3)
A 		0.5
(-1.5)
A 		1.7
(3)
A 		0.6
(-1.1)
A 		2
C 0.7
(-1.7)
A 		0.9
(-1)
A 		2.1
(3)
A 		1.1
(-0.3)
A 		0.3
(-3)
A 		0.5
(-2.3)
A 		2
avr 0.5
(-2.1) 		1.1
(3) 		1
(2.1) 		0.7
(-0.4) 		0.9
(1.3) 		0.4
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172574_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7824
Sequence Type Exemplar sequence
Representative Public ID ZC395.11 NCBI
Target Description ZC395.11 /REP_DB=WormBase Gene ID /WP=CE01437 /TR=Q9GYF9 /GB=AAG00039.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065728(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065728 NCBI Caenorhabditis elegans ZC395.11 (ZC395.11) mRNA, complete cds. 11/11 None
ZC395.11 ENSEMBL cdna:known chromosome:CEL140:III:5286043:5286262:-1 gene:ZC395.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5286041-5286261(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC395.11
Entrez Gene 191153 Entrez gene
SwissProt Q9GYF9 EMBL-EBI
WormBase CE01437 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG00039 Hypothetical protein ZC395.11 [Caenorhabditis elegans] ref|NP_498129.1| ZC395.11 [Caenorhabditis elegans] 6.0E-26
blast CAA98531 Hypothetical protein T11F9.7 [Caenorhabditis elegans] ref|NP_505909.1| T11F9.7 [Caenorhabditis elegans] 6.0E-10
blast Q22398 Zinc metalloproteinase nas-22 precursor (Nematode astacin 22) 6.0E-10
Sequence
Target Sequence 
>C. ELEGANS:172574_X_AT
gtatttctccaaacaaattttctattttttactgatggaagaagactcaagcgtcaagta
tccacacagagagtcaaaaccacgcatggaaagagtatcaatggaagctatccaagatga
atggaggcacttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATTTCTCCAAACAAATTTTCTAT 486 453 15 Antisense
TTTTCTATTTTTTACTGATGGAAGA 269 675 32 Antisense
GAAGACTCAAGCGTCAAGTATCCAC 485 339 55 Antisense
ACTCAAGCGTCAAGTATCCACACAG 651 97 59 Antisense
GCGTCAAGTATCCACACAGAGAGTC 20 293 65 Antisense
CACACAGAGAGTCAAAACCACGCAT 551 189 77 Antisense
CAGAGAGTCAAAACCACGCATGGAA 14 207 81 Antisense
AACCACGCATGGAAAGAGTATCAAT 47 149 92 Antisense
GAAAGAGTATCAATGGAAGCTATCC 70 361 103 Antisense
GTATCAATGGAAGCTATCCAAGATG 112 455 109 Antisense
ATCCAAGATGAATGGAGGCACTTGT 661 39 124 Antisense
Sequence Source Affymetrix Proprietary Database