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[172572_x_at]

Description H12C20.2B /REP_DB=WormBase Gene ID /WP=CE18807 /TR=Q9XXM5 /GB=CAA18354.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 04      6grp_cgc > 74      6grp_cgc_sub > 02_03_04_05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 10.1
(-1.6)
A 		5.6
(-2.6)
A 		3.6
(-3)
A 		31.5
(3)
A 		28
B 6.6
(-1.1)
A 		13.2
(1.6)
A 		16.7
(3)
A 		1.8
(-3)
A 		15
C 19.6
(-0.8)
A 		2.4
(-3)
A 		5.1
(-2.7)
A 		48.8
(3)
A 		46
avr 12.1
(-1.5) 		7.1
(-3) 		8.5
(-2.6) 		27.4
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 2.9
(-2.2)
A 		1.2
(-3)
A 		5.8
(-0.8)
A 		8.4
(0.4)
A 		13.8
(3)
A 		6.8
(-0.3)
A 		13
B 1.9
(-3)
A 		21.1
(3)
A 		16.7
(1.6)
A 		7.6
(-1.2)
A 		15.6
(1.3)
M 		12.6
(0.3)
A 		19
C 21.3
(0.1)
A 		30.5
(1.7)
A 		17.7
(-0.5)
A 		38.6
(3)
A 		18.3
(-0.4)
A 		2.5
(-3)
A 		36
avr 8.7
(-2.2) 		17.6
(2.7) 		13.4
(0.4) 		18.2
(3) 		15.9
(1.7) 		7.3
(-3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 3.7
(1.5)
A 		1.2
(-2.5)
A 		0.9
(-3)
A 		4.6
(3)
A 		4
B 2.1
(-0.1)
A 		3.3
(2)
A 		3.9
(3)
A 		0.4
(-3)
A 		4
C 6.5
(1.6)
A 		0.7
(-3)
A 		1.8
(-2.1)
A 		8.2
(3)
A 		8
avr 4.1
(2.3) 		1.7
(-3) 		2.2
(-1.9) 		4.4
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.5
(-2.8)
A 		0.4
(-3)
A 		1.3
(-1.6)
A 		2.1
(-0.3)
A 		4.2
(3)
A 		1.7
(-0.9)
A 		4
B 0.6
(-3)
A 		7
(3)
A 		4.1
(0.3)
A 		2
(-1.7)
A 		6.3
(2.3)
M 		4.7
(0.8)
A 		6
C 7.9
(2)
A 		9.3
(3)
A 		4.5
(-0.4)
A 		7.8
(1.9)
A 		5.9
(0.6)
A 		0.8
(-3)
A 		9
avr 3
(-1.9) 		5.6
(3) 		3.3
(-1.3) 		4
(0) 		5.5
(2.8) 		2.4
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172572_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12854
Sequence Type Exemplar sequence
Representative Public ID H12C20.2B NCBI
Target Description H12C20.2B /REP_DB=WormBase Gene ID /WP=CE18807 /TR=Q9XXM5 /GB=CAA18354.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073533(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073533 NCBI Caenorhabditis elegans PMS (Post Meiotic Segregation) family member (pms-2) (pms-2) mRNA, complete cds. 11/11 None
H12C20.2b ENSEMBL cdna:known chromosome:CEL140:V:11571539:11575680:-1 gene:H12C20.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_073532 3/11 Cross Hyb Matching Probes A 
SNAP00000002548 3/11 Cross Hyb Matching Probes None
GENEFINDER00000002553 3/11 Cross Hyb Matching Probes None
H12C20.2a 3/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179587 2 1 NM_073532 193600_s_at (11)
NM_073533 172572_x_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11572226-11575556(-) 100.0 100.0
Public Domain and Genome References
Ensembl H12C20.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA18354 Hypothetical protein H12C20.2b [Caenorhabditis elegans] ref|NP_505934.1| PMS (Post Meiotic Segregation) family member (pms-2) [Caenorhabditis elegans] 3.0E-41
Sequence
Target Sequence 
>C. ELEGANS:172572_X_AT
gatggagggtcatttcaaagaatcaatacgatcaaaacacacgtgtgttatcatttcaca
ggaggcaatgttcacttcttttttcttctgttttaacaccggaacttctaaaactgtatt
tcaatagtactggttgttgtcagcttgtcaagtgcaattcggcagttaatcgacaattca
atcgatgctggttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGAGGGTCATTTCAAAGAATCA 540 407 23 Antisense
AATACGATCAAAACACACGTGTGTT 196 173 47 Antisense
CACACGTGTGTTATCATTTCACAGG 340 195 60 Antisense
GTGTTATCATTTCACAGGAGGCAAT 395 485 67 Antisense
ACAGGAGGCAATGTTCACTTCTTTT 420 107 80 Antisense
CAATGTTCACTTCTTTTTTCTTCTG 401 183 88 Antisense
GGAACTTCTAAAACTGTATTTCAAT 553 527 123 Antisense
CAATAGTACTGGTTGTTGTCAGCTT 686 179 144 Antisense
TCAGCTTGTCAAGTGCAATTCGGCA 425 625 162 Antisense
GCAATTCGGCAGTTAATCGACAATT 707 321 176 Antisense
TCGACAATTCAATCGATGCTGGTTC 156 601 192 Antisense
Sequence Source Affymetrix Proprietary Database