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[172570_x_at]

Description Y51A2D.14 /REP_DB=WormBase Gene ID /WP=CE19210 /TR=Q9XXR2 /GB=CAA16401.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 03      4grp_highest_8_8 > 0      4grp_high_8_8 > 45      6grp_highest_nonorm > 15      6grp_total > 24      4grp_total > 50      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3699
1 2 3 4 range
A 4294
(-1)
P 		6563.9
(3)
P 		5281.6
(0.7)
P 		3187.2
(-3)
P 		3377
B 4525.1
(-1.8)
P 		6752.4
(3)
P 		6155
(1.7)
P 		3949.2
(-3)
P 		2803
C 4003.7
(-2.2)
P 		6886.5
(3)
P 		4953.2
(-0.5)
P 		3543.1
(-3)
P 		3343
avr 4274.3
(-1.6) 		6734.3
(3) 		5463.3
(0.6) 		3559.8
(-3) 		3175

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4696
1 2 3 4 5 6 range
A 7546.7
(3)
P 		5822.6
(0.5)
P 		6181.8
(1)
P 		3969
(-2.2)
P 		3900
(-2.3)
P 		3412.9
(-3)
P 		4134
B 8109
(3)
P 		6903.6
(1.2)
P 		6178.3
(0.1)
P 		4428.8
(-2.6)
P 		4197.9
(-2.9)
P 		4145.7
(-3)
P 		3963
C 6956.2
(3)
P 		6384
(2)
P 		4481.9
(-1.2)
P 		4058
(-1.9)
P 		3433.5
(-3)
P 		3902.5
(-2.2)
P 		3523
avr 7537.3
(3) 		6370.1
(1.1) 		5614
(-0.1) 		4151.9
(-2.5) 		3843.8
(-3) 		3820.4
(-3) 		3717
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1513
1 2 3 4 range
A 1563.5
(3)
P 		1424.8
(2.2)
P 		1380.7
(2)
P 		466.5
(-3)
P 		1097
B 1443
(1.4)
P 		1667.7
(3)
P 		1426.3
(1.2)
P 		841.6
(-3)
P 		826
C 1325.3
(0.2)
P 		1979.9
(3)
P 		1726.3
(1.9)
P 		597.4
(-3)
P 		1383
avr 1443.9
(1.6) 		1690.8
(3) 		1511.1
(2) 		635.2
(-3) 		1056

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2005
1 2 3 4 5 6 range
A 1391.2
(-0.3)
P 		2070.8
(3)
P 		1346.3
(-0.5)
P 		1006.6
(-2.1)
P 		1176.8
(-1.3)
P 		830.9
(-3)
P 		1240
B 2821.5
(3)
P 		2297.9
(1.1)
P 		1500.3
(-1.8)
P 		1173
(-3)
P 		1705.6
(-1.1)
P 		1545.9
(-1.6)
P 		1649
C 2578.3
(3)
P 		1947.9
(0.9)
P 		1140.7
(-1.9)
P 		816.1
(-3)
P 		1111
(-2)
P 		1306.4
(-1.3)
P 		1762
avr 2263.7
(3) 		2105.5
(2.2) 		1329.1
(-1.4) 		998.6
(-3) 		1331.1
(-1.4) 		1227.7
(-1.9) 		1265
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172570_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13440
Sequence Type Exemplar sequence
Representative Public ID Y51A2D.14 NCBI
Target Description Y51A2D.14 /REP_DB=WormBase Gene ID /WP=CE19210 /TR=Q9XXR2 /GB=CAA16401.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075232(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075232 NCBI Caenorhabditis elegans Y51A2D.14 (Y51A2D.14) mRNA, complete cds. 11/11 None
GENEFINDER00000034271 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18585243:18585461:1 11/11 None
Y51A2D.14 ENSEMBL cdna:known chromosome:CEL140:V:18585234:18585543:1 gene:Y51A2D.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18585242-18585461(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y51A2D.14
Entrez Gene 180214 Entrez gene
SwissProt Q9XXR2 EMBL-EBI
WormBase CE19210 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16401 Hypothetical protein Y51A2D.14 [Caenorhabditis elegans] ref|NP_507633.1| Y51A2D.14 [Caenorhabditis elegans] 2.0E-25
blast CAE61612 Hypothetical protein CBG05533 [Caenorhabditis briggsae] 2.0E-23
blast NP_504937 C54F6.6 [Caenorhabditis elegans] gb|AAG24007.2| Hypothetical protein C54F6.6 [Caenorhabditis elegans] 6.0E-17
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507633.1 1 4-26
Y51A2D.14 1 4-26
GENEFINDER00000034271 1 4-26
Sequence
Target Sequence 
>C. ELEGANS:172570_X_AT
ccctcatcgagatggcttcagccgatttttcgtgctatttctcggattccatctgcaaat
ccatcacctgcagaaactgcaaagtcgccacctgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCTCATCGAGATGGCTTCAGCCGA 636 259 50 Antisense
GATGGCTTCAGCCGATTTTTCGTGC 132 407 60 Antisense
GCTTCAGCCGATTTTTCGTGCTATT 259 305 64 Antisense
AGCCGATTTTTCGTGCTATTTCTCG 569 83 69 Antisense
GATTTTTCGTGCTATTTCTCGGATT 705 427 73 Antisense
TTTTTCGTGCTATTTCTCGGATTCC 463 675 75 Antisense
TGCTATTTCTCGGATTCCATCTGCA 556 579 82 Antisense
ATTTCTCGGATTCCATCTGCAAATC 97 17 86 Antisense
GGATTCCATCTGCAAATCCATCACC 13 509 93 Antisense
AAATCCATCACCTGCAGAAACTGCA 508 117 106 Antisense
CAGAAACTGCAAAGTCGCCACCTGT 222 205 120 Antisense
Sequence Source Affymetrix Proprietary Database