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[172569_x_at]

Description C24D10.7 /REP_DB=WormBase Gene ID /WP=CE16879 /TR=O46340 /GB=AAB88318.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 16      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 163
1 2 3 4 range
A 45.3
(-3)
A 		75.6
(-1.6)
A 		71.1
(-1.8)
A 		179
(3)
P 		134
B 21.1
(-3)
A 		50
(-0.6)
A 		94.3
(3)
A 		60.2
(0.2)
A 		73
C 50.2
(-3)
A 		57.2
(-2.7)
A 		64.4
(-2.4)
A 		184.4
(3)
P 		134
avr 38.9
(-3) 		60.9
(-1.7) 		76.6
(-0.8) 		141.2
(3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1697
1 2 3 4 5 6 range
A 50.7
(-2.8)
A 		4.8
(-3)
A 		46.3
(-2.9)
A 		175.2
(-2.4)
P 		872.2
(0.1)
P 		1701.7
(3)
P 		1697
B 61
(-2.8)
A 		38.2
(-2.9)
A 		20.8
(-3)
A 		152
(-2.5)
P 		1164.2
(1.5)
P 		1550.3
(3)
P 		1530
C 50
(-2.9)
A 		66.4
(-2.9)
A 		26.7
(-3)
A 		145.9
(-2.6)
A 		1078.2
(0.9)
P 		1636.7
(3)
P 		1610
avr 53.9
(-2.9) 		36.5
(-3) 		31.3
(-3) 		157.7
(-2.5) 		1038.2
(0.8) 		1629.6
(3) 		1598
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 16.5
(-2.9)
A 		16.4
(-3)
A 		18.6
(-1.7)
A 		26.2
(3)
P 		10
B 6.7
(-3)
A 		12.3
(-0.8)
A 		21.9
(3)
A 		12.8
(-0.6)
A 		15
C 16.6
(-2.9)
A 		16.4
(-3)
A 		22.4
(-0.6)
A 		31.1
(3)
P 		15
avr 13.3
(-3) 		15
(-2) 		21
(1.6) 		23.4
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 576
1 2 3 4 5 6 range
A 9.4
(-2.9)
A 		1.7
(-3)
A 		10.1
(-2.9)
A 		44.4
(-2.4)
P 		263.2
(0.8)
P 		414.3
(3)
P 		413
B 21.2
(-2.8)
A 		12.7
(-2.9)
A 		5.1
(-3)
A 		40.2
(-2.6)
P 		473
(1.9)
P 		578.1
(3)
P 		573
C 18.5
(-2.9)
A 		20.2
(-2.9)
A 		6.8
(-3)
A 		29.3
(-2.8)
A 		348.9
(0.8)
P 		547.9
(3)
P 		541
avr 16.4
(-2.9) 		11.5
(-3) 		7.3
(-3) 		38
(-2.6) 		361.7
(1.2) 		513.4
(3) 		506
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172569_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11158
Sequence Type Exemplar sequence
Representative Public ID C24D10.7 NCBI
Target Description C24D10.7 /REP_DB=WormBase Gene ID /WP=CE16879 /TR=O46340 /GB=AAB88318.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068329(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068329 NCBI Caenorhabditis elegans C24D10.7 (C24D10.7) mRNA, complete cds. 11/11 A 
SNAP00000024206 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5162816:5163031:-1 11/11 None
SNAP00000024208 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5165501:5165716:-1 9/11 None
GENEFINDER00000024211 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5162816:5163031:-1 11/11 None
GENEFINDER00000024214 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5165501:5165788:-1 9/11 None
C24D10.7 ENSEMBL cdna:known chromosome:CEL140:IV:5162816:5163031:-1 gene:C24D10.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_069362 2/11 Cross Hyb Matching Probes A 
NM_062470 1/11 Cross Hyb Matching Probes A 
NM_062474 3/11 Cross Hyb Matching Probes A 
GENEFINDER00000024763 3/11 Cross Hyb Matching Probes None
SNAP00000024738 3/11 Cross Hyb Matching Probes None
SNAP00000005480 2/11 Cross Hyb Matching Probes None
GENEFINDER00000005501 2/11 Cross Hyb Matching Probes None
SNAP00000040845 1/11 Cross Hyb Matching Probes None
GENEFINDER00000040847 1/11 Cross Hyb Matching Probes None
SNAP00000004248 2/11 Cross Hyb Matching Probes None
GENEFINDER00000004271 2/11 Cross Hyb Matching Probes None
ZK337.1c.2 2/11 Cross Hyb Matching Probes None
T23B7.1 1/11 Cross Hyb Matching Probes A 
F11G11.8 2/11 Cross Hyb Matching Probes None
K07F5.5.2 2/11 Cross Hyb Matching Probes A 
K07F5.5.1 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4842593-4842809(+) 91.2 91.2
chrII:4860130-4860346(-) 91.67 91.67
chrIV:5162821-5163037(-) 100.0 100.0
chrIV:5165506-5165722(-) 98.61 98.61
Public Domain and Genome References
Gene Title
Ensembl C24D10.7
Entrez Gene 259569 Entrez gene
SwissProt Q76NP8 EMBL-EBI
WormBase CE16879 Wormbase
Functional Annotations
Protein Domains
Database ID Description E-Value
Pfam IPR008498 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF780 3.1E-51
Pfam IPR008498 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF780 3.1E-51
Sequence
Target Sequence 
>C. ELEGANS:172569_X_AT
atggcggacaagtcggcttacatgggcgctggtggctatggatcgggctacatgggatcc
aatgcttcttcgtcaggttatgcccgcgaagactatgcacaaggaggcaatggtggtggt
ggacagcagcagaaccaaggatccggaggaaacaccaacccaggtgggcaggtcttcaag
gcccgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCGGACAAGTCGGCTTACATGG 598 53 13 Antisense
TTACATGGGCGCTGGTGGCTATGGA 449 683 30 Antisense
TGGTGGCTATGGATCGGGCTACATG 27 551 42 Antisense
GGCTACATGGGATCCAATGCTTCTT 451 537 58 Antisense
AATGCTTCTTCGTCAGGTTATGCCC 45 167 73 Antisense
CAGGTTATGCCCGCGAAGACTATGC 347 207 86 Antisense
GCCCGCGAAGACTATGCACAAGGAG 590 285 94 Antisense
GGCAATGGTGGTGGTGGACAGCAGC 309 533 118 Antisense
GACAGCAGCAGAACCAAGGATCCGG 696 367 134 Antisense
GAGGAAACACCAACCCAGGTGGGCA 275 405 158 Antisense
AGGTGGGCAGGTCTTCAAGGCCCGT 49 57 174 Antisense
Sequence Source Affymetrix Proprietary Database