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[172568_x_at]

Description Y43F8B.2B /REP_DB=WormBase Gene ID /WP=CE21887 /TR=Q9XWX6 /GB=CAA21510.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 90      4grp_highest_8_8 > 21      4grp_high_8_8 > 23      6grp_highest_nonorm > 46      6grp_total > 01      4grp_total > 24      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2347
1 2 3 4 range
A 2570.7
(-3)
P 		3264.5
(-1)
P 		4206.6
(1.6)
P 		4699.4
(3)
P 		2129
B 2687
(-2.3)
P 		2446.2
(-3)
P 		3651.4
(0.5)
P 		4492.1
(3)
P 		2046
C 2352.2
(-3)
P 		2552
(-2.3)
P 		3536.4
(1.1)
P 		4100.1
(3)
P 		1748
avr 2536.6
(-3) 		2754.2
(-2.3) 		3798.1
(1) 		4430.5
(3) 		1894

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 920
1 2 3 4 5 6 range
A 3215.2
(2.1)
P 		2669.7
(-1.5)
P 		2440.7
(-3)
P 		2433.9
(-3)
P 		3353.6
(3)
P 		2537.5
(-2.3)
P 		920
B 2477.9
(-3)
P 		3184.4
(3)
P 		3160.3
(2.8)
P 		2576
(-2.2)
P 		3146.9
(2.7)
P 		2736.7
(-0.8)
P 		707
C 2644
(-2.8)
P 		3233.5
(3)
P 		2704.3
(-2.2)
P 		2628.6
(-3)
P 		2710.5
(-2.2)
P 		2655.6
(-2.7)
P 		605
avr 2779
(-0.3) 		3029.2
(2.5) 		2768.4
(-0.5) 		2546.2
(-3) 		3070.3
(3) 		2643.3
(-1.9) 		524
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 628
1 2 3 4 range
A 936
(0.6)
P 		708.6
(-2.7)
P 		1099.7
(3)
P 		687.9
(-3)
P 		412
B 856.9
(1.3)
P 		604.1
(-3)
P 		846.1
(1.1)
P 		957.3
(3)
P 		353
C 778.6
(-2)
P 		733.7
(-2.5)
P 		1232.5
(3)
P 		691.3
(-3)
P 		541
avr 857.2
(-0.2) 		682.1
(-3) 		1059.4
(3) 		778.8
(-1.5) 		377

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 750
1 2 3 4 5 6 range
A 592.7
(-2.2)
P 		949.5
(2.2)
P 		531.5
(-3)
P 		617.3
(-1.9)
P 		1012
(3)
P 		617.8
(-1.9)
P 		481
B 862.2
(-1.2)
P 		1060
(0.8)
P 		767.4
(-2.1)
P 		682.3
(-3)
P 		1278.6
(3)
P 		1020.5
(0.4)
P 		596
C 980
(2.9)
P 		986.6
(3)
P 		688.3
(-0.9)
P 		528.6
(-3)
P 		877.1
(1.6)
P 		889
(1.7)
P 		458
avr 811.6
(-0.3) 		998.7
(2.2) 		662.4
(-2.3) 		609.4
(-3) 		1055.9
(3) 		842.4
(0.1) 		447
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172568_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14697
Sequence Type Exemplar sequence
Representative Public ID Y43F8B.2B NCBI
Target Description Y43F8B.2B /REP_DB=WormBase Gene ID /WP=CE21887 /TR=Q9XWX6 /GB=CAA21510.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075396(11), NM_075395(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075396 NCBI Caenorhabditis elegans Y43F8B.2b (Y43F8B.2) mRNA, complete cds. 11/11 A 
NM_075395 NCBI Caenorhabditis elegans Y43F8B.2a (Y43F8B.2) mRNA, complete cds. 11/11 A 
GENEFINDER00000027196 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19522740:19524408:-1 10/11 None
Y43F8B.2b ENSEMBL cdna:known chromosome:CEL140:V:19522557:19525359:-1 gene:Y43F8B.2 11/11 A 
Y43F8B.2a ENSEMBL cdna:known chromosome:CEL140:V:19522740:19535682:-1 gene:Y43F8B.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19522739-19525339(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y43F8B.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21509 Hypothetical protein Y43F8B.2a [Caenorhabditis elegans] ref|NP_507796.1| Y43F8B.2a [Caenorhabditis elegans] 1.0E-169
blast CAA21510 Hypothetical protein Y43F8B.2b [Caenorhabditis elegans] ref|NP_507797.1| Y43F8B.2b [Caenorhabditis elegans] 1.0E-114
blast CAE61718 Hypothetical protein CBG05668 [Caenorhabditis briggsae] 1.0E-104
blast CAA21509 Hypothetical protein Y43F8B.2a [Caenorhabditis elegans] ref|NP_507796.1| Y43F8B.2a [Caenorhabditis elegans] 2.0E-88
blast CAA21510 Hypothetical protein Y43F8B.2b [Caenorhabditis elegans] ref|NP_507797.1| Y43F8B.2b [Caenorhabditis elegans] 3.0E-88
Protein Domains
Database ID Description E-Value
Pfam IPR007967 EMBL-EBI Protein of unknown function DUF727 5.2E-77
Pfam IPR007967 EMBL-EBI Protein of unknown function DUF727 5.2E-77
Pfam IPR007967 EMBL-EBI Protein of unknown function DUF727 5.2E-77
Sequence
Target Sequence 
>C. ELEGANS:172568_X_AT
gtcccaatgtctcttcacaaggtatcatcaatcaaccggtcagcaggcaccaacccagca
tcgagaggtggtgaatcgtcattggaactggaagcaattgctgccgtccacgaactttcg
ttcgccgtccaatccatctcagtgtcggagatgctcccacgcacgcctgacctcattttt
gtcaatgtcaccaccttagaagctcaaccatattgcctggagctcacattgaagggatgg
agaatcacaagtctcagatcggactgtatggtcggagatttcacgagattggagcttttc
acaaagtactacgatagcttgtaccttcttatggacgatatctcgccgggatacagagag
cggttcagtgagaagcttgtgcagaggttgaagcttattgaggccggcgaggaagaccag
gtggctccatgtgcatccctccagtctccatctctttccactgattcgtcatcaaaagaa
tctcaatactcttcaactgaatcccttccaattgtgacaccagtcagcacaccagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCCCAATGTCTCTTCACAAGGTAT 430 475 178 Antisense
GTATCATCAATCAACCGGTCAGCAG 443 453 199 Antisense
ACTGGAAGCAATTGCTGCCGTCCAC 379 97 264 Antisense
CGTCCAATCCATCTCAGTGTCGGAG 472 245 303 Antisense
CACGCCTGACCTCATTTTTGTCAAT 50 201 339 Antisense
GTCAATGTCACCACCTTAGAAGCTC 273 459 358 Antisense
ATAGCTTGTACCTTCTTATGGACGA 296 21 491 Antisense
GAGGAAGACCAGGTGGCTCCATGTG 608 403 586 Antisense
TCTCTTTCCACTGATTCGTCATCAA 543 611 628 Antisense
AACTGAATCCCTTCCAATTGTGACA 206 143 672 Antisense
TTGTGACACCAGTCAGCACACCAGC 180 707 689 Antisense
Sequence Source Affymetrix Proprietary Database