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[172566_x_at]

Description Y17G9B.2 /REP_DB=WormBase Gene ID /WP=CE24182 /TR=Q9N573 /GB=AAF60451.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 10      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 10.5
(-3)
A 		20.7
(-1.6)
A 		37.8
(0.8)
A 		53.4
(3)
A 		43
B 18.7
(0.4)
A 		6.3
(-2.1)
A 		1.7
(-3)
A 		31.5
(3)
P 		30
C 19.2
(-2.5)
A 		29.4
(-1.2)
A 		14.7
(-3)
A 		64.9
(3)
P 		50
avr 16.1
(-3) 		18.8
(-2.5) 		18.1
(-2.6) 		49.9
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 62.8
(3)
A 		31.8
(-0.4)
A 		51.1
(1.7)
P 		49.9
(1.6)
A 		8.3
(-3)
A 		57.6
(2.4)
A 		55
B 57.2
(-0.1)
A 		36.1
(-1.7)
A 		18.9
(-3)
A 		37.9
(-1.5)
A 		54.5
(-0.3)
A 		97.4
(3)
P 		79
C 52.2
(1.5)
M 		6
(-3)
A 		49.8
(1.3)
A 		31.1
(-0.5)
A 		46.8
(1)
M 		67.1
(3)
A 		61
avr 57.4
(1) 		24.6
(-3) 		39.9
(-1.1) 		39.6
(-1.2) 		36.5
(-1.6) 		74
(3) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 3.8
(-3)
A 		4.5
(-2.3)
A 		9.9
(3)
A 		7.8
(0.9)
A 		6
B 6
(2.3)
A 		1.6
(-1.9)
A 		0.4
(-3)
A 		6.7
(3)
P 		6
C 6.3
(-1.8)
A 		8.5
(0.5)
A 		5.1
(-3)
A 		10.9
(3)
P 		6
avr 5.4
(-2.2) 		4.9
(-3) 		5.1
(-2.7) 		8.5
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 11.6
(1.7)
A 		11.3
(1.6)
A 		11.1
(1.5)
P 		12.6
(2.3)
A 		2.5
(-3)
A 		14
(3)
A 		12
B 19.9
(-0.1)
A 		12
(-1.6)
A 		4.6
(-3)
A 		10
(-2)
A 		22.2
(0.3)
A 		36.3
(3)
P 		32
C 19.4
(2.1)
M 		1.8
(-3)
A 		12.7
(0.2)
A 		6.2
(-1.7)
A 		15.2
(0.9)
M 		22.5
(3)
A 		21
avr 17
(0.2) 		8.4
(-3) 		9.5
(-2.6) 		9.6
(-2.5) 		13.3
(-1.2) 		24.3
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172566_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10674
Sequence Type Exemplar sequence
Representative Public ID Y17G9B.2 NCBI
Target Description Y17G9B.2 /REP_DB=WormBase Gene ID /WP=CE24182 /TR=Q9N573 /GB=AAF60451.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068237(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068237 NCBI Caenorhabditis elegans Y17G9B.2 (Y17G9B.2) mRNA, complete cds. 11/11 None
Y17G9B.2 ENSEMBL cdna:known chromosome:CEL140:IV:4764192:4764615:1 gene:Y17G9B.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4764197-4764484(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y17G9B.2
Entrez Gene 177247 Entrez gene
SwissProt Q9N573 EMBL-EBI
WormBase CE24182 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500638 Y17G9B.2 [Caenorhabditis elegans] gb|AAF60451.1| Hypothetical protein Y17G9B.2 [Caenorhabditis elegans] 9.0E-14
Sequence
Target Sequence 
>C. ELEGANS:172566_X_AT
tggacaacggtgtgtctattccattccaactgctcaaatcacctcaaaaatcgattagtt
atgttcttcaaagaatgactat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGACAACGGTGTGTCTATTCCATT 287 547 14 Antisense
GGACAACGGTGTGTCTATTCCATTC 78 527 15 Antisense
GACAACGGTGTGTCTATTCCATTCC 487 365 16 Antisense
TATTCCATTCCAACTGCTCAAATCA 167 665 30 Antisense
CCAACTGCTCAAATCACCTCAAAAA 659 275 39 Antisense
AACTGCTCAAATCACCTCAAAAATC 598 141 41 Antisense
CTGCTCAAATCACCTCAAAAATCGA 452 237 43 Antisense
ATCACCTCAAAAATCGATTAGTTAT 98 29 51 Antisense
AAAATCGATTAGTTATGTTCTTCAA 651 133 60 Antisense
TCGATTAGTTATGTTCTTCAAAGAA 177 601 64 Antisense
GTTATGTTCTTCAAAGAATGACTAT 174 447 71 Antisense
Sequence Source Affymetrix Proprietary Database