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[172564_x_at]

Description F26A10.1 /REP_DB=WormBase Gene ID /WP=CE02691 /TR=Q19806 /GB=AAA68306.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 84      6grp_high1_10_10 > 47      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 82      6grp_total > 47      4grp_total > 04      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1520
1 2 3 4 range
A 703.3
(-1.3)
P 		416.3
(-2.4)
P 		270.8
(-3)
P 		1790.5
(3)
P 		1520
B 798.5
(-0.9)
P 		431.1
(-2.5)
P 		301.4
(-3)
P 		1742.8
(3)
P 		1441
C 774.2
(-1.3)
P 		487
(-2.5)
P 		376.9
(-3)
P 		1761.7
(3)
P 		1385
avr 758.7
(-1.2) 		444.8
(-2.5) 		316.4
(-3) 		1765
(3) 		1449

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 332
1 2 3 4 5 6 range
A 537.2
(3)
P 		454.5
(1.3)
P 		406.1
(0.3)
P 		337.6
(-1.1)
P 		242.8
(-3)
P 		409
(0.4)
P 		294
B 458.2
(0.8)
P 		438.5
(0.4)
P 		354.4
(-1.2)
P 		258
(-3)
P 		356.7
(-1.1)
P 		574.6
(3)
P 		317
C 480.9
(1.8)
P 		424.5
(0.6)
P 		288.2
(-2.3)
P 		254.5
(-3)
P 		309.9
(-1.8)
P 		535.5
(3)
P 		281
avr 492.1
(2.6) 		439.2
(1.2) 		349.6
(-1.2) 		283.4
(-3) 		303.1
(-2.5) 		506.4
(3) 		223
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 302
1 2 3 4 range
A 256.1
(2.8)
P 		90.4
(-2.4)
P 		70.8
(-3)
P 		262.1
(3)
P 		191
B 254.6
(0.7)
P 		106.5
(-2.3)
P 		69.8
(-3)
P 		371.4
(3)
P 		302
C 256.3
(1.5)
P 		140
(-2.7)
P 		131.4
(-3)
P 		297
(3)
P 		166
avr 255.7
(1.5) 		112.3
(-2.4) 		90.7
(-3) 		310.2
(3) 		220

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 99
(-1.3)
P 		161.7
(3)
P 		88.4
(-2)
P 		85.6
(-2.2)
P 		73.3
(-3)
P 		99.6
(-1.2)
P 		88
B 159.4
(0.7)
P 		146
(0.2)
P 		86.1
(-2.3)
P 		68.3
(-3)
P 		144.9
(0.1)
P 		214.3
(3)
P 		146
C 178.2
(3)
P 		129.5
(0.7)
P 		73.4
(-2)
P 		51.2
(-3)
P 		100.3
(-0.7)
P 		179.2
(3)
P 		128
avr 145.5
(1.8) 		145.7
(1.8) 		82.6
(-2.1) 		68.4
(-3) 		106.2
(-0.6) 		164.4
(3) 		96
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172564_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16152
Sequence Type Exemplar sequence
Representative Public ID F26A10.1 NCBI
Target Description F26A10.1 /REP_DB=WormBase Gene ID /WP=CE02691 /TR=Q19806 /GB=AAA68306.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076888(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076888 NCBI Caenorhabditis elegans F26A10.1 (F26A10.1) mRNA, complete cds. 11/11 None
SNAP00000019808 ENSEMBL cdna:SNAP chromosome:CEL140:X:7627623:7627900:1 11/11 None
GENEFINDER00000019812 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7627623:7627900:1 11/11 None
F26A10.1 ENSEMBL cdna:known chromosome:CEL140:X:7627623:7627790:1 gene:F26A10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7627621-7627789(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F26A10.1
Entrez Gene 184956 Entrez gene
SwissProt Q19806 EMBL-EBI
WormBase CE02691 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE70252 Hypothetical protein CBG16747 [Caenorhabditis briggsae] 6.0E-25
blast AAA68306 Hypothetical protein F26A10.1 [Caenorhabditis elegans] ref|NP_509289.1| F26A10.1 [Caenorhabditis elegans] 9.0E-15
blast AAA68306 Hypothetical protein F26A10.1 [Caenorhabditis elegans] ref|NP_509289.1| F26A10.1 [Caenorhabditis elegans] 1.0E-14
blast CAE70252 Hypothetical protein CBG16747 [Caenorhabditis briggsae] 3.0E-12
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509289.1 1 7-29
F26A10.1 1 7-29
SNAP00000019808 1 7-29
GENEFINDER00000019812 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:172564_X_AT
atgagccactggattgcaactcttcttgccttcatcctcattgccaacgcattcgcagca
ctttccactggagcagatgttggagcttcagatgacgttaggtcgtacgtcatgccattc
tatggaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAGCCACTGGATTGCAACTCTTC 681 43 13 Antisense
TGAGCCACTGGATTGCAACTCTTCT 462 569 14 Antisense
CACTGGATTGCAACTCTTCTTGCCT 205 197 19 Antisense
GCAGCACTTTCCACTGGAGCAGATG 679 311 67 Antisense
GCACTTTCCACTGGAGCAGATGTTG 296 317 70 Antisense
AGATGTTGGAGCTTCAGATGACGTT 295 63 87 Antisense
GGAGCTTCAGATGACGTTAGGTCGT 502 521 94 Antisense
GCTTCAGATGACGTTAGGTCGTACG 616 299 97 Antisense
CGTTAGGTCGTACGTCATGCCATTC 584 247 108 Antisense
GTCGTACGTCATGCCATTCTATGGA 596 471 114 Antisense
GTACGTCATGCCATTCTATGGAATG 277 459 117 Antisense
Sequence Source Affymetrix Proprietary Database