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[172562_x_at]

Description Y11D7A.15 /REP_DB=WormBase Gene ID /WP=CE20197 /TR=Q9XWQ7 /GB=CAA21591.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 39      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 61.5
(3)
A 		9.4
(-3)
A 		28.8
(-0.8)
A 		12
(-2.7)
A 		52
B 37
(3)
A 		19.4
(-0.6)
A 		27.3
(1)
A 		7.4
(-3)
A 		30
C 70.2
(0.2)
A 		55.8
(-1.4)
A 		40.9
(-3)
A 		95.6
(3)
P 		55
avr 56.2
(3) 		28.2
(-3) 		32.3
(-2.1) 		38.3
(-0.8) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 48.7
(1)
A 		15.6
(-2.2)
A 		7.6
(-3)
A 		38
(-0)
A 		56.8
(1.8)
A 		69.1
(3)
A 		62
B 46.6
(0.3)
A 		11.7
(-3)
A 		33.6
(-0.9)
A 		21.6
(-2.1)
A 		64.1
(2)
A 		74.8
(3)
A 		63
C 31.9
(-2.7)
A 		33.6
(-2.5)
A 		55.1
(0.2)
A 		29.6
(-3)
A 		69.8
(2.1)
A 		76.8
(3)
A 		47
avr 42.4
(-0.5) 		20.3
(-3) 		32.1
(-1.7) 		29.7
(-1.9) 		63.6
(1.9) 		73.6
(3) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 22.4
(3)
A 		2
(-2.9)
A 		7.5
(-1.3)
A 		1.8
(-3)
A 		21
B 11.8
(3)
A 		4.8
(-1.1)
A 		6.3
(-0.2)
A 		1.6
(-3)
A 		10
C 23.2
(3)
A 		16.1
(-1.7)
A 		14.2
(-3)
A 		16.1
(-1.7)
P 		9
avr 19.1
(3) 		7.6
(-2.5) 		9.3
(-1.7) 		6.5
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 9
(-0.2)
A 		5.5
(-1.5)
A 		1.7
(-3)
A 		9.6
(0.1)
A 		17.1
(3)
A 		16.8
(2.9)
A 		15
B 16.2
(0.1)
A 		3.9
(-3)
A 		8.2
(-1.9)
A 		5.7
(-2.6)
A 		26
(2.5)
A 		27.9
(3)
A 		24
C 11.8
(-1.2)
A 		10.2
(-1.7)
A 		14
(-0.6)
A 		6
(-3)
A 		22.6
(2.1)
A 		25.7
(3)
A 		20
avr 12.3
(-1) 		6.5
(-3) 		8
(-2.5) 		7.1
(-2.8) 		21.9
(2.4) 		23.5
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172562_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10218
Sequence Type Exemplar sequence
Representative Public ID Y11D7A.15 NCBI
Target Description Y11D7A.15 /REP_DB=WormBase Gene ID /WP=CE20197 /TR=Q9XWQ7 /GB=CAA21591.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000011204 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9247614:9248488:-1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_063573 2/11 Cross Hyb Matching Probes A 
NM_060244 2/11 Cross Hyb Matching Probes A 
GENEFINDER00000030081 2/11 Cross Hyb Matching Probes None
SNAP00000030078 2/11 Cross Hyb Matching Probes None
SNAP00000013215 2/11 Cross Hyb Matching Probes None
GENEFINDER00000013242 2/11 Cross Hyb Matching Probes None
GENEFINDER00000011225 3/11 Cross Hyb Matching Probes None
C03C11.1 2/11 Cross Hyb Matching Probes A 
C01G6.2 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9247558-9248059(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02724 Hypothetical protein C03C11.1 [Caenorhabditis elegans] ref|NP_492645.1| C03C11.1 [Caenorhabditis elegans] 1.0E-23
blast CAE60215 Hypothetical protein CBG03783 [Caenorhabditis briggsae] 2.0E-20
blast CAB02820 Hypothetical protein F42H11.1 [Caenorhabditis elegans] emb|CAB05721.1| Hypothetical protein F42H11.1 [Caenorhabditis elegans] ref|NP_492538.1| F42H11.1 [Caenorhabditis elegans] 1.0E-13
Protein Domains
Database ID Description E-Value
Pfam IPR004296 EMBL-EBI Protein of unknown function DUF236 1.4E-8
Pfam IPR004296 EMBL-EBI Protein of unknown function DUF236 1.2E-35
Sequence
Target Sequence 
>C. ELEGANS:172562_X_AT
tattttcgcggctgtcgcaggaacacacgatccaaattatcaaactcttgctggagttga
tggaaacgtattccaagagaaaggaaaagctcctgatgctgctggtggagcttcccctgc
tgccggtgctccaaaaccgggaggtcctggaatggctgccacccacgatctcaactacca
aacacttgctggaattggaaacgattgtttcgacaagaaagaaggtgcgaaaccagctgc
tggtggtgcggctccaggtgctccaaaagccggtggtcctggaatggctgcaactcatga
tccgaactatcagacactggctggaattggaaacgattgcttccagaagaagtgatttga
gtcaacttgtgcaaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTTTCGCGGCTGTCGCAGGAACA 269 659 20 Antisense
GAAAAGCTCCTGATGCTGCTGGTGG 100 355 103 Antisense
TGCTGCCGGTGCTCCAAAACCGGGA 676 579 137 Antisense
AACCGGGAGGTCCTGGAATGGCTGC 565 145 154 Antisense
GATCTCAACTACCAAACACTTGCTG 26 419 186 Antisense
AGAAGGTGCGAAACCAGCTGCTGGT 373 75 239 Antisense
TCCAGGTGCTCCAAAAGCCGGTGGT 676 585 272 Antisense
AGCCGGTGGTCCTGGAATGGCTGCA 443 81 287 Antisense
ATGGCTGCAACTCATGATCCGAACT 360 51 303 Antisense
GATCCGAACTATCAGACACTGGCTG 553 415 318 Antisense
GTGATTTGAGTCAACTTGTGCAAAC 146 485 371 Antisense
Sequence Source Affymetrix Proprietary Database