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[172559_at]

Description Y54C5A.1 /REP_DB=WormBase Gene ID /WP=CE19626 /TR=Q9TZE5 /GB=AAC68723.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 6.8
(3)
A 		3.2
(-3)
A 		4.1
(-1.5)
A 		4.9
(-0.2)
A 		4
B 3.2
(-3)
A 		6.6
(-2.1)
A 		5.6
(-2.4)
A 		26.5
(3)
A 		23
C 5.4
(-2.1)
A 		6.9
(-1.7)
A 		1.9
(-3)
A 		25.2
(3)
A 		23
avr 5.1
(-2.5) 		5.6
(-2.3) 		3.9
(-3) 		18.9
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 5.1
(-3)
A 		13.5
(-1.7)
A 		18.5
(-0.9)
A 		43.3
(3)
A 		7.3
(-2.7)
A 		15.9
(-1.3)
A 		38
B 2.3
(-1.8)
A 		2
(-2.1)
A 		3.9
(-0.2)
A 		7.2
(3)
A 		1.1
(-3)
A 		2.1
(-2)
A 		6
C 5.6
(-1)
A 		11.7
(3)
A 		3.6
(-2.3)
A 		2.8
(-2.8)
A 		2.5
(-3)
A 		2.8
(-2.8)
A 		9
avr 4.3
(-2.7) 		9.1
(-0.7) 		8.7
(-0.8) 		17.8
(3) 		3.6
(-3) 		6.9
(-1.6) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 2.5
(3)
A 		0.7
(-3)
A 		1.1
(-1.7)
A 		0.7
(-3)
A 		2
B 1
(-3)
A 		1.6
(-2.2)
A 		1.3
(-2.6)
A 		5.6
(3)
A 		5
C 1.8
(-1.2)
A 		2
(-0.8)
A 		0.7
(-3)
A 		4.3
(3)
A 		4
avr 1.8
(-1.1) 		1.4
(-2) 		1
(-3) 		3.5
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.9
(-3)
A 		4.8
(-0.7)
A 		4
(-1.2)
A 		11
(3)
A 		2.2
(-2.2)
A 		3.9
(-1.2)
A 		10
B 0.8
(-1.7)
A 		0.7
(-2.1)
A 		0.9
(-1.3)
A 		1.9
(3)
A 		0.5
(-3)
A 		0.8
(-1.7)
A 		1
C 2.1
(0)
A 		3.6
(3)
A 		0.9
(-2.4)
A 		0.6
(-3)
A 		0.8
(-2.6)
A 		0.9
(-2.4)
A 		3
avr 1.3
(-2.8) 		3
(0.3) 		1.9
(-1.7) 		4.5
(3) 		1.2
(-3) 		1.9
(-1.7) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172559_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5839
Sequence Type Exemplar sequence
Representative Public ID Y54C5A.1 NCBI
Target Description Y54C5A.1 /REP_DB=WormBase Gene ID /WP=CE19626 /TR=Q9TZE5 /GB=AAC68723.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062324(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062324 NCBI Caenorhabditis elegans Y54C5A.1 (Y54C5A.1) mRNA, complete cds. 11/11 None
Y54C5A.1 ENSEMBL cdna:known chromosome:CEL140:II:4140895:4141099:1 gene:Y54C5A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4140893-4141098(+) 91.19 100.0
Public Domain and Genome References
Gene Title
Ensembl Y54C5A.1
Entrez Gene 190254 Entrez gene
SwissProt Q9TZE5 EMBL-EBI
WormBase CE19626 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68723 Hypothetical protein Y54C5A.1 [Caenorhabditis elegans] ref|NP_494725.1| Y54C5A.1 [Caenorhabditis elegans] 2.0E-24
Sequence
Target Sequence 
>C. ELEGANS:172559_AT
gcaggcagtaggtgtgcaggagggagcccttcacaatatgattttttggtcccgtgactt
tttttatgaagctccaaattttcttaatagaccagtgaactttgaccatcaata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGGCAGTAGGTGTGCAGGAGGGA 443 309 15 Antisense
GTAGGTGTGCAGGAGGGAGCCCTTC 408 435 22 Antisense
TGTGCAGGAGGGAGCCCTTCACAAT 258 557 27 Antisense
AGCCCTTCACAATATGATTTTTTGG 387 81 39 Antisense
ATATGATTTTTTGGTCCCGTGACTT 212 21 50 Antisense
TGGTCCCGTGACTTTTTTTATGAAG 296 551 61 Antisense
GTGACTTTTTTTATGAAGCTCCAAA 425 469 68 Antisense
GAAGCTCCAAATTTTCTTAATAGAC 343 341 82 Antisense
GCTCCAAATTTTCTTAATAGACCAG 699 297 85 Antisense
AATAGACCAGTGAACTTTGACCATC 644 171 100 Antisense
GACCAGTGAACTTTGACCATCAATA 361 383 104 Antisense
Sequence Source Affymetrix Proprietary Database