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[172558_s_at]

Description C33H5.17 /REP_DB=WormBase Gene ID /WP=CE04160 /TR=Q18418 /GB=AAA82274.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 76      4grp_high_8_8 > 20      6grp_highest_nonorm > 90      6grp_total > 66      4grp_total > 12      6grp_highest_sub > In      6grp_high1_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 83.1
(-0.3)
P 		72.7
(-1.1)
P 		50.2
(-3)
P 		122.1
(3)
P 		72
B 50.7
(-3)
P 		52.6
(-2.8)
M 		52.8
(-2.8)
M 		124.8
(3)
P 		74
C 90.8
(0.8)
P 		70.4
(-0.7)
P 		40.7
(-3)
P 		119.4
(3)
P 		79
avr 74.9
(-0.8) 		65.2
(-1.6) 		47.9
(-3) 		122.1
(3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 56.3
(-2)
P 		56.2
(-2)
P 		94.1
(3)
P 		62.5
(-1.2)
P 		48.8
(-3)
P 		72
(0.1)
P 		45
B 48.2
(-3)
P 		75.2
(-0.9)
P 		98
(1)
P 		52.7
(-2.6)
P 		85.2
(-0.1)
P 		123.8
(3)
P 		76
C 63.3
(-1.8)
P 		100.6
(1.3)
P 		49.1
(-3)
P 		81.4
(-0.3)
P 		89.5
(0.4)
P 		120.9
(3)
P 		72
avr 55.9
(-3) 		77.3
(-0.4) 		80.4
(-0) 		65.5
(-1.8) 		74.5
(-0.8) 		105.6
(3) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 30.2
(3)
P 		15.8
(-2.1)
P 		13.1
(-3)
P 		17.9
(-1.3)
P 		17
B 16.2
(-1.3)
P 		13
(-2.7)
M 		12.2
(-3)
M 		26.6
(3)
P 		14
C 30.1
(3)
P 		20.2
(-0.7)
P 		14.2
(-3)
P 		20.1
(-0.8)
P 		16
avr 25.5
(3) 		16.3
(-1.5) 		13.2
(-3) 		21.5
(1) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 10.4
(-3)
P 		20
(2.7)
P 		20.5
(3)
P 		15.8
(0.2)
P 		14.7
(-0.4)
P 		17.5
(1.2)
P 		10
B 16.8
(-2.5)
P 		25
(-1)
P 		23.8
(-1.2)
P 		14
(-3)
P 		34.6
(0.8)
P 		46.2
(3)
P 		32
C 23.4
(-0.7)
P 		30.7
(0.9)
P 		12.5
(-3)
P 		16.4
(-2.2)
P 		29
(0.5)
P 		40.5
(3)
P 		28
avr 16.9
(-2.5) 		25.2
(0) 		18.9
(-1.9) 		15.4
(-3) 		26.1
(0.3) 		34.7
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172558_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9297
Sequence Type Exemplar sequence
Representative Public ID C33H5.17 NCBI
Target Description C33H5.17 /REP_DB=WormBase Gene ID /WP=CE04160 /TR=Q18418 /GB=AAA82274.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068895(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068895 NCBI Caenorhabditis elegans C33H5.17 (C33H5.17) mRNA, complete cds. 11/11 None
SNAP00000004490 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7809955:7812792:-1 11/11 None
GENEFINDER00000004494 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7811217:7812792:-1 11/11 None
C33H5.17 ENSEMBL cdna:known chromosome:CEL140:IV:7811204:7812792:-1 gene:C33H5.17 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7811222-7812798(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C33H5.17
Entrez Gene 177568 Entrez gene
SwissProt Q18418 EMBL-EBI
WormBase CE04160 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:263526_AT zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein at
DROSOPHILA_2:1640476_AT dm
DROSGENOME1:154720_AT dm
CHICKEN:GGA.15206.1.S1_S_AT zinc finger, CCCH-type with G patch domain gga
HG-U133_PLUS_2:221848_AT zinc finger, CCCH-type with G patch domain hs
HG-U133A_2:221848_AT zinc finger, CCCH-type with G patch domain hs
HG-U133A:221848_AT zinc finger, CCCH-type with G patch domain hs
HU35KSUBB:RC_W63728_AT zinc finger, CCCH-type with G patch domain hs
U133_X3P:HS.11900.0.S1_3P_S_AT zinc finger, CCCH-type with G patch domain hs
HG-U133A_2:57539_AT zinc finger, CCCH-type with G patch domain hs
HG-U133_PLUS_2:57539_AT zinc finger, CCCH-type with G patch domain hs
HG-U133A:57539_AT zinc finger, CCCH-type with G patch domain hs
HG-U95B:57539_AT zinc finger, CCCH-type with G patch domain hs
MG-U74BV2:114540_AT zinc finger, CCCH-type with G patch domain mm
MOE430A:1424548_AT zinc finger, CCCH-type with G patch domain mm
MOUSE430A_2:1424548_AT zinc finger, CCCH-type with G patch domain mm
MOUSE430_2:1424548_AT zinc finger, CCCH-type with G patch domain mm
MU19KSUBC:TC39760_AT Zinc finger, CCCH-type with G patch domain (Zgpat), mRNA mm
RG-U34B:RC_AA924186_AT similar to cDNA sequence BC021513 (predicted) rn
RAE230A:1374147_AT similar to cDNA sequence BC021513 (predicted) rn
RAT230_2:1374147_AT similar to cDNA sequence BC021513 (predicted) rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA82274 Hypothetical protein C33H5.17 [Caenorhabditis elegans] ref|NP_501296.1| C33H5.17 [Caenorhabditis elegans] 0.0
blast CAE68111 Hypothetical protein CBG13754 [Caenorhabditis briggsae] 1.0E-138
blast CAE70894 Hypothetical protein CBG17685 [Caenorhabditis briggsae] 1.0E-133
Protein Domains
Database ID Description E-Value
scop a.2.6.Effector domain of the protein kinase pkn/prk1 All alpha proteins; Long alpha-hairpin; Effector domain of the protein kinase pkn/prk1; Effector domain of the protein kinase pkn/prk1 2.09999990463257
Pfam IPR000467 EMBL-EBI D111/G-patch domain 1.0E-16
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 1.1E-5
Pfam IPR000467 EMBL-EBI D111/G-patch domain 1.6E-12
Sequence
Target Sequence 
>C. ELEGANS:172558_S_AT
ggaggaggtgttggtatgaagttaatgatgaaaatgggttataaagttggagaaggactt
gggaaacgaagtgatggaattgtacacgcaattcaagcaagaatttgtaagaaaaatgct
tctcttgatgaagtgatgacacgaaaacgaaaatttattgatagaaaagaagttcaaaaa
aacaaaaacatcaagaagctgaagactactgatgagtccgaaatggatatttttgctttc
atcaacagaaaattggagaagaaaaacgaaagaacgtttgctgatgtacgtaaagagact
caggaaatggctggatattcatcaaaaacgcttggcgcaaaaaatctggatcttgaatta
gaactaaagcaattgaaagaaaaacagaacaaattaaaaagtggaattcaacggaatcgt
ggtgataagaatacagtttccaaaatgagtgaatctctacgggaagtcgatgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGGAGGTGTTGGTATGAAGTTAA 328 515 754 Antisense
ATTGTACACGCAATTCAAGCAAGAA 324 5 832 Antisense
AGCTGAAGACTACTGATGAGTCCGA 50 81 950 Antisense
GAAATGGATATTTTTGCTTTCATCA 608 361 973 Antisense
ACGAAAGAACGTTTGCTGATGTACG 65 93 1019 Antisense
CAGGAAATGGCTGGATATTCATCAA 566 207 1054 Antisense
TATTCATCAAAAACGCTTGGCGCAA 526 661 1069 Antisense
GCTTGGCGCAAAAAATCTGGATCTT 286 305 1083 Antisense
GGAATTCAACGGAATCGTGGTGATA 322 533 1156 Antisense
TGAGTGAATCTCTACGGGAAGTCGA 559 565 1199 Antisense
GAATCTCTACGGGAAGTCGATGCAA 310 327 1204 Antisense
Sequence Source Affymetrix Proprietary Database