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[172557_x_at]

Description C06G3.12 /REP_DB=WormBase Gene ID /WP=CE07988 /TR=Q17756 /GB=AAB03141.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 27      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 28.9
(-2.4)
A 		23.2
(-3)
A 		47.8
(-0.5)
A 		83.3
(3)
A 		60
B 51.7
(1.2)
A 		72.2
(3)
A 		2.8
(-3)
A 		54.5
(1.5)
P 		69
C 20.9
(-3)
A 		53.7
(3)
A 		30.3
(-1.3)
P 		45.3
(1.5)
A 		33
avr 33.8
(-1.8) 		49.7
(1) 		27
(-3) 		61
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 130
1 2 3 4 5 6 range
A 97
(0.8)
P 		15.7
(-3)
A 		24.7
(-2.6)
A 		49.8
(-1.4)
M 		128.2
(2.2)
P 		145.3
(3)
P 		130
B 24.2
(-3)
A 		30.4
(-2.6)
A 		54.6
(-1.3)
A 		62.6
(-0.8)
P 		96.4
(1.1)
P 		128.9
(3)
P 		105
C 20.8
(-3)
A 		49.9
(-1.5)
A 		50.2
(-1.5)
P 		45.8
(-1.8)
P 		124
(2.2)
P 		140.9
(3)
P 		120
avr 47.3
(-2.1) 		32
(-3) 		43.2
(-2.4) 		52.7
(-1.8) 		116.2
(1.7) 		138.4
(3) 		106
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 10.5
(1.4)
A 		5
(-3)
A 		12.5
(3)
A 		12.2
(2.8)
A 		8
B 16.5
(2.5)
A 		17.8
(3)
A 		0.7
(-3)
A 		11.6
(0.8)
P 		17
C 6.9
(-3)
A 		15.4
(3)
A 		10.5
(-0.5)
P 		7.6
(-2.5)
A 		9
avr 11.3
(1.3) 		12.7
(3) 		7.9
(-3) 		10.5
(0.3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 17.9
(-0.7)
P 		5.6
(-3)
A 		5.4
(-3)
A 		12.6
(-1.7)
M 		38.7
(3)
P 		35.4
(2.4)
P 		33
B 8.4
(-3)
A 		10.1
(-2.7)
A 		13.3
(-2.3)
A 		16.6
(-1.8)
P 		39.2
(1.7)
P 		48.1
(3)
P 		40
C 7.7
(-3)
A 		15.2
(-1.9)
A 		12.8
(-2.2)
P 		9.2
(-2.8)
P 		40.1
(1.9)
P 		47.2
(3)
P 		40
avr 11.3
(-2.8) 		10.3
(-3) 		10.5
(-3) 		12.8
(-2.5) 		39.3
(2.2) 		43.6
(3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172557_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9265
Sequence Type Exemplar sequence
Representative Public ID C06G3.12 NCBI
Target Description C06G3.12 /REP_DB=WormBase Gene ID /WP=CE07988 /TR=Q17756 /GB=AAB03141.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068695
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000022456 ENSEMBL cdna:SNAP chromosome:CEL140:III:7958597:7958896:-1 None
GENEFINDER00000022473 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7958597:7958896:-1 None
NM_068695 NCBI Caenorhabditis elegans C06G3.12 (C06G3.12) mRNA, complete cds. None
C06G3.12 ENSEMBL cdna:known chromosome:CEL140:IV:7053597:7053929:-1 gene:C06G3.12 None
GENEFINDER00000008754 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7053597:7053929:-1 None
SNAP00000008745 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7053597:7053929:-1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_066332 2/11 Cross Hyb Matching Probes A 
F54H12.3 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7053602-7055369(-) 81.77 100.0
Public Domain and Genome References
Gene Title
Ensembl C06G3.12
Entrez Gene 177477 Entrez gene
WormBase CE32570 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB03141 Hypothetical protein C06G3.12 [Caenorhabditis elegans] ref|NP_501096.2| C06G3.12 [Caenorhabditis elegans] 3.0E-32
blast AAA28054 Hypothetical protein F54H12.3 [Caenorhabditis elegans] ref|NP_498733.1| F54H12.3 [Caenorhabditis elegans] sp|P34457|YMD3_CAEEL Hypothetical protein F54H12.3 in chromosome III 4.0E-26
blast AAA28054 Hypothetical protein F54H12.3 [Caenorhabditis elegans] ref|NP_498733.1| F54H12.3 [Caenorhabditis elegans] sp|P34457|YMD3_CAEEL Hypothetical protein F54H12.3 in chromosome III 2.0E-25
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501096.2 1 30-52
C06G3.12 1 30-52
SNAP00000022456 1 28-50
GENEFINDER00000022473 1 28-50
SNAP00000008745 1 30-52
GENEFINDER00000008754 1 30-52
Sequence
Target Sequence 
>C. ELEGANS:172557_X_AT
aatgttttttgatccttcacagcttaaaaaacgatcaagaggtactatgtcgaattcaac
taccgccccaaccgcgccacatgcgcctgaagatcaaggatcaaccattaatggaaaatc
gattccacagccaatgttggctggagctatttttggagtgatctttggaattttctgctt
gattcttcatgtttgtctggttagatatcttgtcaaagctcgtgcaaagcatattccgaa
ggttcgcaaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGTTTTTTGATCCTTCACAGCTT 627 159 18 Antisense
TTGATCCTTCACAGCTTAAAAAACG 25 705 26 Antisense
GATCAAGAGGTACTATGTCGAATTC 59 417 50 Antisense
CTATGTCGAATTCAACTACCGCCCC 365 225 62 Antisense
GCGCCACATGCGCCTGAAGATCAAG 378 287 91 Antisense
GAAAATCGATTCCACAGCCAATGTT 620 353 131 Antisense
GTTGGCTGGAGCTATTTTTGGAGTG 699 435 153 Antisense
GGAGTGATCTTTGGAATTTTCTGCT 115 517 172 Antisense
CTTGATTCTTCATGTTTGTCTGGTT 156 219 195 Antisense
GATATCTTGTCAAAGCTCGTGCAAA 493 425 221 Antisense
AGCATATTCCGAAGGTTCGCAAAGT 512 77 245 Antisense
Sequence Source Affymetrix Proprietary Database