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[172556_x_at]

Description R03H10.8 /REP_DB=WormBase Gene ID /WP=CE02844 /TR=Q9GYM3 /GB=AAG00004.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 45      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 36
(-1.3)
A 		38.2
(-0.7)
A 		30.2
(-3)
A 		50.9
(3)
A 		21
B 62
(1.3)
A 		71
(3)
A 		39.7
(-3)
A 		59.6
(0.8)
A 		31
C 89.8
(3)
A 		49.1
(0)
A 		29.9
(-1.4)
A 		7.6
(-3)
A 		82
avr 62.6
(3) 		52.8
(1) 		33.3
(-3) 		39.4
(-1.8) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 1.6
(-3)
A 		5.4
(-2.5)
A 		48.8
(3)
A 		1.8
(-3)
A 		32.7
(1)
A 		9.9
(-1.9)
A 		47
B 3.8
(-2.5)
A 		21.4
(1.6)
A 		25.3
(2.5)
A 		27.6
(3)
A 		21.6
(1.6)
A 		1.5
(-3)
A 		26
C 26.6
(1.8)
A 		32.7
(3)
A 		1.9
(-2.9)
A 		4
(-2.5)
A 		25.1
(1.5)
A 		1.6
(-3)
A 		31
avr 10.7
(-1.3) 		19.8
(1.2) 		25.3
(2.7) 		11.1
(-1.2) 		26.5
(3) 		4.3
(-3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 13.1
(3)
A 		8.3
(-2.1)
A 		7.9
(-2.6)
A 		7.5
(-3)
A 		6
B 19.8
(3)
A 		17.5
(1.7)
A 		9.2
(-3)
A 		12.7
(-1)
A 		11
C 29.7
(3)
A 		14.1
(-0.3)
A 		10.4
(-1.1)
A 		1.3
(-3)
A 		28
avr 20.9
(3) 		13.3
(-0.3) 		9.2
(-2.1) 		7.2
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.3
(-3)
A 		1.9
(-2.1)
A 		10.6
(3)
A 		0.5
(-2.9)
A 		9.9
(2.6)
A 		2.4
(-1.8)
A 		10
B 1.3
(-2.5)
A 		7.1
(1.8)
A 		6.1
(1)
A 		7.3
(1.9)
A 		8.8
(3)
A 		0.6
(-3)
A 		8
C 9.8
(2.9)
A 		10
(3)
A 		0.5
(-3)
A 		0.8
(-2.8)
A 		8.1
(1.8)
A 		0.5
(-3)
A 		10
avr 3.8
(-1) 		6.3
(1) 		5.7
(0.5) 		2.9
(-1.7) 		8.9
(3) 		1.2
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172556_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4643
Sequence Type Exemplar sequence
Representative Public ID R03H10.8 NCBI
Target Description R03H10.8 /REP_DB=WormBase Gene ID /WP=CE02844 /TR=Q9GYM3 /GB=AAG00004.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) R03H10.8
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
R03H10.8 R03H10.8 /REP_DB=WormBase Gene ID /WP=CE02844 /TR=Q9GYM3 /GB=AAG00004.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4157282-4157835(-) 85.27 100.0
Sequence
Target Sequence 
>C. ELEGANS:172556_X_AT
tccacatcaatcaagacattctcaccaacgtcgatgctcaccgctccccagcagtcaagg
ctgcaatccagaggactatcgaggagaagcgacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCACATCAATCAAGACATTCTCAC 247 589 17 Antisense
ATCAATCAAGACATTCTCACCAACG 270 27 22 Antisense
AATCAAGACATTCTCACCAACGTCG 511 169 25 Antisense
TCAAGACATTCTCACCAACGTCGAT 666 629 27 Antisense
CTCCCCAGCAGTCAAGGCTGCAATC 204 235 60 Antisense
CCCAGCAGTCAAGGCTGCAATCCAG 681 255 63 Antisense
GTCAAGGCTGCAATCCAGAGGACTA 587 463 70 Antisense
AAGGCTGCAATCCAGAGGACTATCG 62 161 73 Antisense
GGCTGCAATCCAGAGGACTATCGAG 698 535 75 Antisense
GCAATCCAGAGGACTATCGAGGAGA 170 321 79 Antisense
GAGGACTATCGAGGAGAAGCGACAT 210 405 87 Antisense
Sequence Source Affymetrix Proprietary Database