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[172555_x_at]

Description K01D12.15 /REP_DB=WormBase Gene ID /WP=CE28043 /TR=Q27223 /GB=CAA99878.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 16      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 31
(-3)
A 		40.9
(-1.9)
A 		39.2
(-2.1)
A 		84.3
(3)
A 		53
B 37.9
(-3)
A 		41.9
(-1.5)
A 		53.9
(3)
A 		38.9
(-2.6)
A 		16
C 32.1
(-3)
A 		48.9
(-0.6)
A 		38.4
(-2.1)
A 		74
(3)
A 		42
avr 33.7
(-3) 		43.9
(-1.1) 		43.8
(-1.1) 		65.7
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 773
1 2 3 4 5 6 range
A 64.5
(-2.7)
P 		20.6
(-3)
A 		57.4
(-2.7)
A 		67.9
(-2.6)
A 		224.1
(-1.4)
P 		777.2
(3)
P 		757
B 35.3
(-3)
A 		39.4
(-3)
A 		38.9
(-3)
A 		60.5
(-2.7)
A 		366.7
(0.3)
P 		638.6
(3)
P 		603
C 30.6
(-2.8)
A 		69
(-2.5)
A 		3.9
(-3)
A 		72.4
(-2.5)
M 		605.1
(1.8)
P 		751.6
(3)
P 		748
avr 43.5
(-2.9) 		43
(-2.9) 		33.4
(-3) 		66.9
(-2.7) 		398.6
(0.2) 		722.5
(3) 		689
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 11.3
(1.2)
A 		8.9
(-3)
A 		10.3
(-0.5)
A 		12.3
(3)
A 		3
B 12.1
(2.4)
A 		10.3
(-0.1)
A 		12.5
(3)
A 		8.3
(-3)
A 		4
C 10.6
(-3)
A 		14.1
(3)
A 		13.4
(1.8)
A 		12.5
(0.3)
A 		4
avr 11.3
(-1.4) 		11.1
(-2.5) 		12.1
(3) 		11
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 251
1 2 3 4 5 6 range
A 11.9
(-2.8)
P 		7.3
(-3)
A 		12.5
(-2.8)
A 		17.2
(-2.7)
A 		67.6
(-1)
P 		189.2
(3)
P 		182
B 12.3
(-2.9)
A 		13.1
(-2.9)
A 		9.4
(-3)
A 		16
(-2.8)
A 		149
(0.7)
P 		238.1
(3)
P 		229
C 11.3
(-2.8)
A 		21.1
(-2.5)
A 		1
(-3)
A 		14.6
(-2.7)
M 		195.8
(1.7)
P 		251.6
(3)
P 		251
avr 11.8
(-2.9) 		13.8
(-2.8) 		7.6
(-3) 		15.9
(-2.8) 		137.5
(0.6) 		226.3
(3) 		219
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172555_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12688
Sequence Type Exemplar sequence
Representative Public ID K01D12.15 NCBI
Target Description K01D12.15 /REP_DB=WormBase Gene ID /WP=CE28043 /TR=Q27223 /GB=CAA99878.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073701(11), NM_073705(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073701 NCBI Caenorhabditis elegans K01D12.15 (K01D12.15) mRNA, complete cds. 11/11 A 
NM_073705 NCBI Caenorhabditis elegans K01D12.7 (K01D12.7) mRNA, complete cds. 9/11 A 
SNAP00000007089 ENSEMBL cdna:SNAP chromosome:CEL140:V:12389042:12389296:1 11/11 None
SNAP00000007094 ENSEMBL cdna:SNAP chromosome:CEL140:V:12403817:12404071:-1 9/11 None
GENEFINDER00000007103 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12403817:12404071:-1 9/11 None
GENEFINDER00000007110 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12389042:12389296:1 11/11 None
K01D12.15 ENSEMBL cdna:known chromosome:CEL140:V:12388863:12389357:1 gene:K01D12.15 11/11 A 
K01D12.7 ENSEMBL cdna:known chromosome:CEL140:V:12403738:12404433:-1 gene:K01D12.7 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028257 1/11 Cross Hyb Matching Probes None
SNAP00000033713 1/11 Cross Hyb Matching Probes None
GENEFINDER00000033791 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12389041-12389296(+) 77.65 100.0
chrV:12403816-12404071(-) 76.86 99.22
Public Domain and Genome References
Gene Title

Ensembl K01D12.15
K01D12.7
Entrez Gene 179698 Entrez gene
179701 Entrez gene
SwissProt Q27223 EMBL-EBI
Q95QD3 EMBL-EBI
WormBase CE28043 Wormbase
CE28483 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99866 Hypothetical protein K01D12.7 [Caenorhabditis elegans] ref|NP_506106.1| K01D12.7 [Caenorhabditis elegans] 3.0E-52
blast CAA99878 Hypothetical protein K01D12.15 [Caenorhabditis elegans] ref|NP_506102.1| K01D12.15 [Caenorhabditis elegans] 9.0E-37
blast CAA99878 Hypothetical protein K01D12.15 [Caenorhabditis elegans] ref|NP_506102.1| K01D12.15 [Caenorhabditis elegans] 1.0E-33
blast CAA99866 Hypothetical protein K01D12.7 [Caenorhabditis elegans] ref|NP_506106.1| K01D12.7 [Caenorhabditis elegans] 3.0E-29
blast CAA16354 Hypothetical protein Y45F10B.3 [Caenorhabditis elegans] ref|NP_502622.1| Y45F10B.3 [Caenorhabditis elegans] 1.0E-10
blast CAB62795 Hypothetical protein C47A4.5 [Caenorhabditis elegans] ref|NP_502651.1| C47A4.5 [Caenorhabditis elegans] 1.0E-10
Sequence
Target Sequence 
>C. ELEGANS:172555_X_AT
aaatcagcatttgtgccagtcgatgcaatcggaaatcacaaaaacaccgatcttgacgtt
gatattgacgacgaattgttcggaaaaaaaccaccaaaagccagtgcaagtgcaaccaaa
gcagccgctccaccggctccggctccagccccagccccaccaaaacctgctgcagcacct
gccccagccgctggaaagtaccaataca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCAGCATTTGTGCCAGTCGATG 525 117 22 Antisense
CATTTGTGCCAGTCGATGCAATCGG 685 213 29 Antisense
GCCAGTCGATGCAATCGGAAATCAC 156 281 36 Antisense
GGAAATCACAAAAACACCGATCTTG 144 527 52 Antisense
AAACACCGATCTTGACGTTGATATT 440 129 63 Antisense
GATCTTGACGTTGATATTGACGACG 208 419 70 Antisense
TGATATTGACGACGAATTGTTCGGA 1 565 81 Antisense
AACCACCAAAAGCCAGTGCAAGTGC 544 147 110 Antisense
GTGCAAGTGCAACCAAAGCAGCCGC 180 481 125 Antisense
CTGCCCCAGCCGCTGGAAAGTACCA 485 237 200 Antisense
CCAGCCGCTGGAAAGTACCAATACA 103 273 205 Antisense
Sequence Source Affymetrix Proprietary Database