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[172554_x_at]

Description C24H10.4 /REP_DB=WormBase Gene ID /WP=CE04069 /TR=Q18132 /GB=AAA81450.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 11      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 10.8
(-1.6)
A 		1.3
(-3)
A 		3.3
(-2.7)
A 		42.2
(3)
A 		41
B 2.4
(-1.5)
A 		6.4
(3)
A 		1.1
(-3)
A 		1.8
(-2.2)
A 		5
C 17.3
(-1.2)
A 		24.1
(-0.3)
A 		5.1
(-3)
A 		46.8
(3)
A 		42
avr 10.2
(-1.5) 		10.6
(-1.4) 		3.2
(-3) 		30.3
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 18.6
(0.9)
A 		1.6
(-2.8)
A 		28.1
(3)
A 		1.2
(-2.9)
A 		0.8
(-3)
A 		1.4
(-2.9)
A 		27
B 0.5
(-3)
A 		1.6
(-0.6)
A 		1.6
(-0.6)
A 		1.1
(-1.7)
A 		1.2
(-1.5)
A 		3.3
(3)
A 		3
C 1.2
(-2.4)
A 		1.5
(-1.8)
A 		3.9
(3)
A 		2.3
(-0.2)
A 		0.9
(-3)
A 		2.7
(0.6)
A 		3
avr 6.8
(0.4) 		1.6
(-2.6) 		11.2
(3) 		1.5
(-2.7) 		1
(-3) 		2.5
(-2.1) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 3.9
(0.7)
A 		0.3
(-3)
A 		0.9
(-2.4)
A 		6.2
(3)
A 		6
B 0.8
(-0.7)
A 		1.6
(3)
A 		0.3
(-3)
A 		0.4
(-2.5)
A 		1
C 5.7
(0.8)
A 		6.9
(2)
A 		1.8
(-3)
A 		7.9
(3)
A 		6
avr 3.5
(0.9) 		2.9
(0) 		1
(-3) 		4.8
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 3.4
(0.3)
A 		0.6
(-2.6)
A 		6.1
(3)
A 		0.3
(-2.9)
A 		0.2
(-3)
A 		0.3
(-2.9)
A 		6
B 0.2
(-3)
A 		0.5
(-1.2)
A 		0.4
(-1.8)
A 		0.3
(-2.4)
A 		0.5
(-1.2)
A 		1.2
(3)
A 		1
C 0.4
(-2.1)
A 		0.5
(-1.3)
A 		1
(3)
A 		0.5
(-1.3)
A 		0.3
(-3)
A 		0.9
(2.1)
A 		1
avr 1.3
(-0.3) 		0.5
(-2.5) 		2.5
(3) 		0.4
(-2.7) 		0.3
(-3) 		0.8
(-1.6) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172554_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16876
Sequence Type Exemplar sequence
Representative Public ID C24H10.4 NCBI
Target Description C24H10.4 /REP_DB=WormBase Gene ID /WP=CE04069 /TR=Q18132 /GB=AAA81450.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076459(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076459 NCBI Caenorhabditis elegans C24H10.4 (C24H10.4) mRNA, complete cds. 11/11 None
GENEFINDER00000004809 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5058235:5058700:-1 11/11 None
SNAP00000004800 ENSEMBL cdna:SNAP chromosome:CEL140:X:5058350:5058700:-1 11/11 None
C24H10.4 ENSEMBL cdna:known chromosome:CEL140:X:5058350:5058700:-1 gene:C24H10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5058350-5058701(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C24H10.4
Entrez Gene 182858 Entrez gene
SwissProt Q18132 EMBL-EBI
WormBase CE04069 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81450 Hypothetical protein C24H10.4 [Caenorhabditis elegans] ref|NP_508860.1| C24H10.4 [Caenorhabditis elegans] 2.0E-21
Sequence
Target Sequence 
>C. ELEGANS:172554_X_AT
atgggacacatctccaaatcagcagctgcaaagaatgcatctgctaagagagctcgcaac
ggccaggtggcaaaaagagaagctaagaaaaagtacgaagaactcaaaacatgcatcgag
tttgagggtcttacagatggccaaatcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGGACACATCTCCAAATCAGCAG 116 51 13 Antisense
CACATCTCCAAATCAGCAGCTGCAA 105 197 19 Antisense
AAATCAGCAGCTGCAAAGAATGCAT 227 117 28 Antisense
GAATGCATCTGCTAAGAGAGCTCGC 544 329 45 Antisense
TGCTAAGAGAGCTCGCAACGGCCAG 687 577 54 Antisense
AGCTCGCAACGGCCAGGTGGCAAAA 254 81 63 Antisense
CGGCCAGGTGGCAAAAAGAGAAGCT 59 243 72 Antisense
GTACGAAGAACTCAAAACATGCATC 632 457 105 Antisense
ACATGCATCGAGTTTGAGGGTCTTA 281 107 121 Antisense
GTTTGAGGGTCTTACAGATGGCCAA 596 451 132 Antisense
GGGTCTTACAGATGGCCAAATCAAA 641 495 138 Antisense
Sequence Source Affymetrix Proprietary Database