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[172553_at]

Description T07F12.5 /REP_DB=WormBase Gene ID /WP=CE02869 /TR=Q22325 /GB=AAA68421.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 50      4grp_total > 29      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 57.9
(3)
P 		47.2
(1.6)
A 		11.7
(-3)
A 		28.3
(-0.8)
A 		46
B 26.8
(0.7)
A 		30.9
(2.2)
A 		16.8
(-3)
A 		33
(3)
A 		16
C 50.1
(0.4)
P 		47.4
(-0.1)
A 		29.7
(-3)
A 		65.7
(3)
M 		36
avr 44.9
(3) 		41.8
(2.3) 		19.4
(-3) 		42.3
(2.4) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 53.8
(1.5)
A 		18.9
(-1.7)
A 		31.4
(-0.6)
M 		70.7
(3)
A 		4.5
(-3)
A 		16.8
(-1.9)
A 		66
B 38.4
(3)
A 		37.4
(2.8)
A 		23.2
(-0.4)
A 		37.6
(2.8)
P 		11.7
(-3)
A 		27.6
(0.6)
A 		27
C 23.8
(-2.4)
A 		21.4
(-2.8)
A 		58.9
(3)
A 		43.2
(0.6)
A 		19.8
(-3)
A 		29.9
(-1.5)
A 		39
avr 38.7
(1.2) 		25.9
(-0.8) 		37.8
(1) 		50.5
(3) 		12
(-3) 		24.8
(-1) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 21.1
(3)
P 		10.2
(-0.6)
A 		3.1
(-3)
A 		4.1
(-2.7)
A 		18
B 8.5
(3)
A 		7.6
(1.8)
A 		3.9
(-3)
A 		7
(1)
A 		5
C 16.6
(3)
P 		13.6
(0.1)
A 		10.3
(-3)
A 		11.1
(-2.2)
M 		6
avr 15.4
(3) 		10.5
(-0.1) 		5.8
(-3) 		7.4
(-2) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 9.9
(0.1)
A 		6.7
(-1.1)
A 		6.8
(-1)
M 		17.9
(3)
A 		1.4
(-3)
A 		4.1
(-2)
A 		17
B 13.4
(3)
A 		12.5
(2.4)
A 		5.6
(-2.4)
A 		10
(0.7)
P 		4.7
(-3)
A 		10.3
(0.9)
A 		9
C 8.8
(-1.3)
A 		6.5
(-2.9)
A 		15
(3)
A 		8.7
(-1.4)
A 		6.4
(-3)
A 		10
(-0.5)
A 		9
avr 10.7
(1.9) 		8.6
(0.3) 		9.1
(0.7) 		12.2
(3) 		4.2
(-3) 		8.1
(-0.1) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172553_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16666
Sequence Type Exemplar sequence
Representative Public ID T07F12.5 NCBI
Target Description T07F12.5 /REP_DB=WormBase Gene ID /WP=CE02869 /TR=Q22325 /GB=AAA68421.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000035178 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4899447:4900854:-1 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4900638-4900770(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:172553_AT
ctgacatcccatctatgctggttaccaacgaggacgacgagtcggtagatgtggaaatgg
ataaggtagcttacacttttgagatattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGACATCCCATCTATGCTGGTTAC 121 239 20 Antisense
GACATCCCATCTATGCTGGTTACCA 438 369 22 Antisense
CATCCCATCTATGCTGGTTACCAAC 215 211 24 Antisense
TCCCATCTATGCTGGTTACCAACGA 8 599 26 Antisense
ATGCTGGTTACCAACGAGGACGACG 483 33 34 Antisense
TGGTTACCAACGAGGACGACGAGTC 433 505 38 Antisense
TTACCAACGAGGACGACGAGTCGGT 425 667 41 Antisense
GACGACGAGTCGGTAGATGTGGAAA 261 379 52 Antisense
GAGTCGGTAGATGTGGAAATGGATA 151 401 58 Antisense
GGATAAGGTAGCTTACACTTTTGAG 681 507 78 Antisense
GGTAGCTTACACTTTTGAGATATTT 368 505 84 Antisense
Sequence Source Affymetrix Proprietary Database