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[172551_at]

Description R10A10.1 /REP_DB=WormBase Gene ID /WP=CE12668 /TR=P91403 /GB=AAB37825.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 01      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 3.7
(-3)
A 		8.4
(-1.6)
A 		17.8
(1.1)
A 		24.5
(3)
A 		21
B 17.2
(-0.6)
A 		12.6
(-1.4)
A 		2.5
(-3)
A 		39.9
(3)
A 		37
C 15.1
(-2.2)
A 		11.9
(-3)
A 		18.2
(-1.4)
A 		36.2
(3)
A 		24
avr 12
(-2.7) 		11
(-3) 		12.8
(-2.5) 		33.5
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 18.2
(-2)
A 		16.8
(-2.3)
A 		40
(3)
A 		13.8
(-3)
A 		17
(-2.3)
A 		28.2
(0.3)
A 		26
B 22.6
(3)
A 		9.7
(-3)
A 		17.7
(0.7)
A 		19.2
(1.4)
A 		17.7
(0.7)
A 		12.4
(-1.7)
A 		13
C 20.1
(3)
A 		13.8
(0.7)
A 		18.2
(2.3)
A 		7.6
(-1.5)
A 		20.2
(3)
A 		3.5
(-3)
A 		17
avr 20.3
(0.5) 		13.4
(-3) 		25.3
(3) 		13.5
(-2.9) 		18.3
(-0.5) 		14.7
(-2.3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.3
(-3)
A 		1.8
(-2.1)
A 		4.6
(3)
A 		3.6
(1.2)
A 		3
B 5.5
(0.7)
A 		3.1
(-1.1)
A 		0.6
(-3)
A 		8.5
(3)
A 		8
C 5
(0.3)
A 		3.4
(-3)
A 		6.3
(3)
A 		6.1
(2.6)
A 		3
avr 3.9
(-1) 		2.8
(-3) 		3.8
(-1.2) 		6.1
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 3.4
(-3)
A 		6
(-0.1)
A 		8.7
(3)
A 		3.5
(-2.9)
A 		5.1
(-1.1)
A 		6.9
(1)
A 		5
B 7.8
(3)
A 		3.2
(-3)
A 		4.3
(-1.6)
A 		5.1
(-0.5)
A 		7.2
(2.2)
A 		4.6
(-1.2)
A 		5
C 7.5
(3)
A 		4.2
(-0.1)
A 		4.6
(0.2)
A 		1.5
(-2.7)
A 		6.5
(2)
A 		1.2
(-3)
A 		6
avr 6.2
(2.8) 		4.5
(-0.7) 		5.9
(2.2) 		3.4
(-3) 		6.3
(3) 		4.2
(-1.3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172551_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1471
Sequence Type Exemplar sequence
Representative Public ID R10A10.1 NCBI
Target Description R10A10.1 /REP_DB=WormBase Gene ID /WP=CE12668 /TR=P91403 /GB=AAB37825.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059447(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059447 NCBI Caenorhabditis elegans R10A10.1 (R10A10.1) mRNA, complete cds. 11/11 None
R10A10.1 ENSEMBL cdna:known chromosome:CEL140:I:6426700:6426944:1 gene:R10A10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6426628-6426873(+) 64.81 100.0
Public Domain and Genome References
Gene Title
Ensembl R10A10.1
Entrez Gene 187758 Entrez gene
SwissProt P91403 EMBL-EBI
WormBase CE12668 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37825 Hypothetical protein R10A10.1 [Caenorhabditis elegans] ref|NP_491848.1| R10A10.1 [Caenorhabditis elegans] 1.0E-13
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491848.1 1 20-42
R10A10.1 1 20-42
Sequence
Target Sequence 
>C. ELEGANS:172551_AT
cttcaaagctttttcccacaattcatcttatcattacttgacttttcctatttcttcaca
actcaactacaaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCAAAGCTTTTTCCCACAATTCA 656 219 70 Antisense
AAAGCTTTTTCCCACAATTCATCTT 166 123 74 Antisense
AGCTTTTTCCCACAATTCATCTTAT 649 77 76 Antisense
TTTTTCCCACAATTCATCTTATCAT 336 675 79 Antisense
TCCCACAATTCATCTTATCATTACT 151 599 83 Antisense
AATTCATCTTATCATTACTTGACTT 131 177 89 Antisense
ATCTTATCATTACTTGACTTTTCCT 567 31 94 Antisense
TCATTACTTGACTTTTCCTATTTCT 248 619 100 Antisense
TCCTATTTCTTCACAACTCAACTAC 5 593 115 Antisense
CTATTTCTTCACAACTCAACTACAA 147 225 117 Antisense
TTTCTTCACAACTCAACTACAAATC 140 673 120 Antisense
Sequence Source Affymetrix Proprietary Database