[Home] | [Total List]

[172550_x_at]

Description H11L12.1 /REP_DB=WormBase Gene ID /WP=CE20957 /TR=Q9TYV1 /GB=AAC78197.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 31      6grp_total > 95      4grp_total > 32      6grp_total_sub > Increase      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 196
1 2 3 4 range
A 61.4
(-3)
P 		82.8
(-2.1)
P 		187.9
(2.4)
P 		200.9
(3)
P 		140
B 89.1
(-3)
A 		92.7
(-2.8)
P 		190.6
(3)
P 		143.1
(0.2)
P 		102
C 70.4
(-3)
P 		143
(-0.7)
P 		185.9
(0.7)
P 		257.5
(3)
P 		187
avr 73.6
(-3) 		106.2
(-1.5) 		188.1
(2.4) 		200.5
(3) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 710
1 2 3 4 5 6 range
A 76.6
(-2.7)
A 		39.9
(-3)
P 		95.5
(-2.5)
P 		247.8
(-1.2)
P 		637.7
(2.2)
P 		732.5
(3)
P 		693
B 36.8
(-2.9)
A 		29.8
(-3)
A 		71.4
(-2.6)
A 		256.3
(-1.1)
P 		739.6
(3)
P 		673.4
(2.4)
P 		710
C 38.9
(-3)
A 		63.7
(-2.8)
A 		67.9
(-2.7)
P 		153.3
(-2)
P 		733
(3)
P 		428.2
(0.4)
P 		694
avr 50.8
(-2.9) 		44.5
(-3) 		78.3
(-2.7) 		219.1
(-1.4) 		703.4
(3) 		611.4
(2.2) 		659
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 22.4
(-2.2)
P 		18
(-3)
P 		49.1
(3)
P 		29.4
(-0.8)
P 		31
B 28.4
(-1.5)
A 		22.9
(-3)
P 		44.2
(3)
P 		30.5
(-0.9)
P 		21
C 23.3
(-3)
P 		41.1
(-0.4)
P 		64.8
(3)
P 		43.4
(-0.1)
P 		42
avr 24.7
(-3) 		27.3
(-2.4) 		52.7
(3) 		34.4
(-0.9) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 291
1 2 3 4 5 6 range
A 14.1
(-3)
A 		14.2
(-3)
P 		20.8
(-2.8)
P 		62.9
(-1.4)
P 		192.4
(3)
P 		178.3
(2.5)
P 		178
B 12.8
(-2.9)
A 		9.9
(-3)
A 		17.3
(-2.8)
A 		67.9
(-1.8)
P 		300.5
(3)
P 		251.1
(2)
P 		291
C 14.4
(-3)
A 		19.4
(-2.9)
A 		17.3
(-2.9)
P 		30.8
(-2.6)
P 		237.2
(3)
P 		143.4
(0.5)
P 		223
avr 13.8
(-3) 		14.5
(-3) 		18.5
(-2.9) 		53.9
(-2) 		243.4
(3) 		190.9
(1.6) 		230
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172550_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17844
Sequence Type Exemplar sequence
Representative Public ID H11L12.1 NCBI
Target Description H11L12.1 /REP_DB=WormBase Gene ID /WP=CE20957 /TR=Q9TYV1 /GB=AAC78197.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078460(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078460 NCBI Caenorhabditis elegans H11L12.1 (H11L12.1) mRNA, complete cds. 11/11 A 
GENEFINDER00000021875 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17710433:17711605:-1 11/11 None
SNAP00000021874 ENSEMBL cdna:SNAP chromosome:CEL140:X:17710466:17711583:-1 10/11 None
H11L12.1 ENSEMBL cdna:known chromosome:CEL140:X:17710395:17711583:-1 gene:H11L12.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_066830 3/11 Cross Hyb Matching Probes A 
NM_060522 4/11 Cross Hyb Matching Probes A 
SNAP00000039064 4/11 Cross Hyb Matching Probes None
GENEFINDER00000039065 4/11 Cross Hyb Matching Probes None
SNAP00000010163 3/11 Cross Hyb Matching Probes None
GENEFINDER00000010174 3/11 Cross Hyb Matching Probes None
C27C7.1 4/11 Cross Hyb Matching Probes A 
T16G12.3 3/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl H11L12.1
Entrez Gene 186723 Entrez gene
SwissProt Q9TYV1 EMBL-EBI
WormBase CE20957 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC78197 Hypothetical protein H11L12.1 [Caenorhabditis elegans] ref|NP_510861.1| H11L12.1 [Caenorhabditis elegans] 1.0E-119
blast AAC78197 Hypothetical protein H11L12.1 [Caenorhabditis elegans] ref|NP_510861.1| H11L12.1 [Caenorhabditis elegans] 1.0E-118
blast AAC78197 Hypothetical protein H11L12.1 [Caenorhabditis elegans] ref|NP_510861.1| H11L12.1 [Caenorhabditis elegans] 1.0E-116
blast CAB03931 Hypothetical protein C27C7.1 [Caenorhabditis elegans] ref|NP_492923.1| C27C7.1 [Caenorhabditis elegans] 1.0E-92
blast CAA82972 Hypothetical protein T16G12.3 [Caenorhabditis elegans] ref|NP_499231.2| T16G12.3 [Caenorhabditis elegans] 6.0E-92
blast CAA82972 Hypothetical protein T16G12.3 [Caenorhabditis elegans] ref|NP_499231.2| T16G12.3 [Caenorhabditis elegans] 7.0E-92
Sequence
Target Sequence 
>C. ELEGANS:172550_X_AT
acccttcaagcggatcacagagccgtaacttaacttctgctcagtccggaggccgcaatg
ctcataaggatcttcacgagcgccatgtccatccttcacaaggatatcaacgtcatggat
ccaaggctccagctcatggccacccttcaagccaaggagcacgaaggtcccaacacgagt
tgtcaaacttcccgatacttctggccaaccttatgcaggatacaaaagccacggcatctg
ccagttgtgcatccaatcaggacacgctacaaccgactgcttccactatgtcggacggtg
agcccgaagaggacaaggtgaagctctgtggaaaccgcctggaagtcggagtcaccgaca
atctggccggcactcagcgccgcaaggaacaacaacagctgcaaggcgctcaagccaaga
agcagcaggccccacagcgcgatgtcaaccgcaaggccaaccatcaaaaattatccagga
agcgtcgctatgctccgtacaaggatgatgtcactggagcaataatatgtggtgatcacc
tccatccatatctattgtta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCCTTCAAGCGGATCACAGAGCCG 45 91 170 Antisense
TAACTTAACTTCTGCTCAGTCCGGA 156 637 195 Antisense
ATAAGGATCTTCACGAGCGCCATGT 436 23 233 Antisense
TGGCCACCCTTCAAGCCAAGGAGCA 600 541 306 Antisense
TGTCAAACTTCCCGATACTTCTGGC 298 557 350 Antisense
TACTTCTGGCCAACCTTATGCAGGA 251 645 365 Antisense
GCATCTGCCAGTTGTGCATCCAATC 639 309 403 Antisense
CAATCAGGACACGCTACAACCGACT 379 181 423 Antisense
GCTTCCACTATGTCGGACGGTGAGC 365 305 448 Antisense
CACAGCGCGATGTCAACCGCAAGGC 525 195 602 Antisense
TCACCTCCATCCATATCTATTGTTA 80 627 705 Antisense
Sequence Source Affymetrix Proprietary Database