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[172549_x_at]

Description W08E12.9 /REP_DB=WormBase Gene ID /WP=CE24043 /TR=Q9N5A9 /GB=AAF39992.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 84      4grp_total > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 0.6
(-3)
A 		2.8
(-2.3)
A 		1
(-2.9)
A 		19.4
(3)
A 		19
B 2.6
(-2.2)
A 		1.8
(-3)
A 		4.1
(-0.8)
A 		8.1
(3)
A 		6
C 2.5
(-2.8)
A 		0.8
(-3)
A 		2.1
(-2.8)
A 		51
(3)
P 		50
avr 1.9
(-3) 		1.8
(-3) 		2.4
(-2.9) 		26.2
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 0.8
(-3)
A 		10.7
(-0.9)
A 		26.4
(2.5)
A 		4.1
(-2.3)
A 		28.6
(3)
A 		19.9
(1.1)
A 		28
B 1.2
(-3)
A 		1.9
(-2.8)
A 		2.9
(-2.6)
A 		25.3
(3)
A 		8.2
(-1.3)
A 		2.5
(-2.7)
A 		24
C 2.1
(-2.7)
A 		0.8
(-3)
A 		1.8
(-2.8)
A 		26.9
(3)
A 		26.3
(2.9)
A 		13.2
(-0.1)
A 		26
avr 1.4
(-3) 		4.5
(-2.1) 		10.4
(-0.2) 		18.8
(2.3) 		21
(3) 		11.9
(0.2) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.2
(-3)
A 		0.6
(-2.1)
A 		0.3
(-2.8)
A 		2.8
(3)
A 		3
B 0.8
(-1.5)
A 		0.5
(-3)
A 		1
(-0.5)
A 		1.7
(3)
A 		1
C 0.8
(-2.6)
A 		0.2
(-3)
A 		0.7
(-2.6)
A 		8.6
(3)
P 		8
avr 0.6
(-2.7) 		0.4
(-3) 		0.7
(-2.6) 		4.4
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.1
(-3)
A 		3.8
(-0.4)
A 		5.7
(1)
A 		1
(-2.4)
A 		8.6
(3)
A 		4.8
(0.3)
A 		9
B 0.4
(-3)
A 		0.6
(-2.8)
A 		0.7
(-2.7)
A 		6.7
(3)
A 		3.3
(-0.2)
A 		0.9
(-2.5)
A 		6
C 0.8
(-2.6)
A 		0.3
(-3)
A 		0.4
(-2.9)
A 		5.4
(0.7)
A 		8.5
(3)
A 		4.4
(0)
A 		8
avr 0.4
(-3) 		1.6
(-1.9) 		2.3
(-1.2) 		4.4
(0.8) 		6.8
(3) 		3.4
(-0.2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172549_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11146
Sequence Type Exemplar sequence
Representative Public ID W08E12.9 NCBI
Target Description W08E12.9 /REP_DB=WormBase Gene ID /WP=CE24043 /TR=Q9N5A9 /GB=AAF39992.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067916(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067916 NCBI Caenorhabditis elegans W08E12.9 (W08E12.9) mRNA, complete cds. 11/11 None
W08E12.9 ENSEMBL cdna:known chromosome:CEL140:IV:3306737:3307559:-1 gene:W08E12.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3306742-3307565(-) 90.18 100.0
Public Domain and Genome References
Gene Title
Ensembl W08E12.9
Entrez Gene 189296 Entrez gene
SwissProt Q9N5A9 EMBL-EBI
WormBase CE24043 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39992 Hypothetical protein W08E12.9 [Caenorhabditis elegans] ref|NP_500317.1| W08E12.9 [Caenorhabditis elegans] 3.0E-31
Sequence
Target Sequence 
>C. ELEGANS:172549_X_AT
atgaccaccagttgtgatttttcagtacttgtacctacccccgccgcctccgccgccaaa
ttttttccgaaatttttccaaaaagtttccataattagttataccgtagagaccttgata
ttttcaaaattttattataaaacccaatatgagaactatgctacgagcccgaaaaaaaga
aaaaaagaaataaaaaataaaaaagttgttcaaatactcactgaaggagtccagtttatg
atgccaaaaacacttttcttacaatttaaaaaatttttgaagatatcatcatccgaactg
tg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGACCACCAGTTGTGATTTTTCAG 380 45 13 Antisense
TGATTTTTCAGTACTTGTACCTACC 695 563 27 Antisense
GTTTCCATAATTAGTTATACCGTAG 427 451 97 Antisense
TACCGTAGAGACCTTGATATTTTCA 458 649 114 Antisense
ATATGAGAACTATGCTACGAGCCCG 506 21 159 Antisense
GAACTATGCTACGAGCCCGAAAAAA 532 349 165 Antisense
AAAGTTGTTCAAATACTCACTGAAG 270 123 214 Antisense
AATACTCACTGAAGGAGTCCAGTTT 535 171 225 Antisense
GAAGGAGTCCAGTTTATGATGCCAA 679 333 235 Antisense
GATGCCAAAAACACTTTTCTTACAA 272 413 252 Antisense
TGAAGATATCATCATCCGAACTGTG 296 575 290 Antisense
Sequence Source Affymetrix Proprietary Database