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[172548_at]

Description H39E20.1 /REP_DB=WormBase Gene ID /WP=CE19948 /TR=Q9TZM8 /GB=AAC67406.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 10.8
(-3)
A 		55.8
(3)
A 		12.5
(-2.8)
A 		46.7
(1.8)
A 		45
B 4.3
(-3)
A 		16
(-1.1)
A 		22.4
(-0)
A 		40.8
(3)
A 		37
C 4.4
(-3)
A 		36.7
(0.8)
A 		6
(-2.8)
A 		54.8
(3)
A 		50
avr 6.5
(-3) 		36.2
(1.4) 		13.6
(-2) 		47.4
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 14.5
(-1.1)
A 		4.9
(-2.8)
A 		4.5
(-2.8)
A 		6.6
(-2.5)
A 		38.7
(3)
A 		3.6
(-3)
A 		35
B 14.1
(0.1)
A 		22.9
(3)
A 		4.5
(-3)
A 		14.2
(0.2)
A 		7.3
(-2.1)
A 		17.3
(1.2)
A 		18
C 4.3
(-2.9)
A 		4.5
(-2.8)
A 		8.9
(-1.8)
A 		3.7
(-3)
A 		30.1
(3)
A 		4.7
(-2.8)
A 		26
avr 11
(-1.5) 		10.8
(-1.5) 		6
(-3) 		8.2
(-2.3) 		25.4
(3) 		8.5
(-2.2) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 3.9
(-2.6)
A 		12.1
(3)
A 		3.3
(-3)
A 		6.8
(-0.6)
A 		9
B 1.4
(-3)
A 		4
(-0.9)
A 		5.2
(0.1)
A 		8.7
(3)
A 		7
C 1.5
(-3)
A 		10.6
(3)
A 		2.1
(-2.6)
A 		9.2
(2.1)
A 		9
avr 2.3
(-3) 		8.9
(3) 		3.5
(-1.9) 		8.2
(2.4) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 2.7
(-2)
A 		1.7
(-2.6)
A 		1
(-2.9)
A 		1.7
(-2.6)
A 		11.7
(3)
A 		0.9
(-3)
A 		11
B 4.9
(0.5)
A 		7.6
(3)
A 		1.1
(-3)
A 		3.7
(-0.6)
A 		3
(-1.2)
A 		6.5
(2)
A 		7
C 1.6
(-2.4)
A 		1.4
(-2.5)
A 		2.3
(-1.9)
A 		0.7
(-3)
A 		9.7
(3)
A 		1.6
(-2.4)
A 		9
avr 3.1
(-1.5) 		3.6
(-1.1) 		1.5
(-3) 		2
(-2.5) 		8.1
(3) 		3
(-1.6) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172548_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18365
Sequence Type Exemplar sequence
Representative Public ID H39E20.1 NCBI
Target Description H39E20.1 /REP_DB=WormBase Gene ID /WP=CE19948 /TR=Q9TZM8 /GB=AAC67406.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075858(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075858 NCBI Caenorhabditis elegans H39E20.1 (H39E20.1) mRNA, complete cds. 11/11 None
GENEFINDER00000009248 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1396348:1396546:-1 11/11 None
H39E20.1 ENSEMBL cdna:known chromosome:CEL140:X:1396348:1396546:-1 gene:H39E20.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1396347-1396546(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H39E20.1
Entrez Gene 186809 Entrez gene
SwissProt Q9TZM8 EMBL-EBI
WormBase CE19948 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC67406 Hypothetical protein H39E20.1 [Caenorhabditis elegans] ref|NP_508259.1| H39E20.1 [Caenorhabditis elegans] 2.0E-22
Sequence
Target Sequence 
>C. ELEGANS:172548_AT
atgccccaatttgttgtgaacttgtttcgatacaaattctatcgggataatggcccagac
tctatcggagcaaatattggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCCCCAATTTGTTGTGAACTTGT 440 39 13 Antisense
GCCCCAATTTGTTGTGAACTTGTTT 428 285 15 Antisense
TTTGTTGTGAACTTGTTTCGATACA 276 665 22 Antisense
AACTTGTTTCGATACAAATTCTATC 594 137 31 Antisense
AATTCTATCGGGATAATGGCCCAGA 234 173 47 Antisense
ATCGGGATAATGGCCCAGACTCTAT 445 35 53 Antisense
GGATAATGGCCCAGACTCTATCGGA 545 509 57 Antisense
TAATGGCCCAGACTCTATCGGAGCA 172 637 60 Antisense
ATGGCCCAGACTCTATCGGAGCAAA 582 51 62 Antisense
GGCCCAGACTCTATCGGAGCAAATA 688 539 64 Antisense
GACTCTATCGGAGCAAATATTGGAT 550 373 70 Antisense
Sequence Source Affymetrix Proprietary Database