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[172546_x_at]

Description F11G11.8 /REP_DB=WormBase Gene ID /WP=CE02882 /TR=Q22693 /GB=AAB37838.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 08      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 34.9
(-0.8)
A 		4.8
(-3)
A 		34.2
(-0.8)
A 		85.3
(3)
P 		81
B 6.9
(-3)
A 		24
(-1)
A 		53.3
(2.4)
A 		58.7
(3)
P 		52
C 15.2
(-3)
A 		17
(-2.9)
A 		35.6
(-1.5)
A 		96
(3)
P 		81
avr 19
(-2.7) 		15.3
(-3) 		41
(-0.6) 		80
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1938
1 2 3 4 5 6 range
A 2.9
(-3)
A 		6
(-3)
A 		49.3
(-2.8)
P 		229.6
(-2.2)
P 		1331.7
(1.8)
P 		1655
(3)
P 		1652
B 43
(-3)
A 		40.9
(-3)
A 		40.6
(-3)
M 		216.6
(-2.4)
P 		1614.6
(2.4)
P 		1793.8
(3)
P 		1753
C 33.9
(-2.9)
A 		57.3
(-2.8)
A 		7.2
(-3)
A 		221.2
(-2.3)
P 		1525.2
(1.7)
P 		1940.8
(3)
P 		1934
avr 26.6
(-3) 		34.7
(-3) 		32.4
(-3) 		222.5
(-2.3) 		1490.5
(2) 		1796.5
(3) 		1770
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 12.7
(3)
A 		1
(-3)
A 		8.9
(1.1)
A 		12.5
(2.9)
P 		12
B 2.2
(-3)
A 		5.9
(-0.8)
A 		12.4
(2.9)
A 		12.5
(3)
P 		10
C 5
(-2.9)
A 		4.9
(-3)
A 		12.4
(1)
A 		16.2
(3)
P 		11
avr 6.6
(-1.3) 		3.9
(-3) 		11.2
(1.5) 		13.7
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 668
1 2 3 4 5 6 range
A 0.5
(-3)
A 		2.1
(-3)
A 		10.7
(-2.8)
P 		58.2
(-2.1)
P 		401.8
(3)
P 		402.9
(3)
P 		402
B 15
(-3)
A 		13.6
(-3)
A 		9.9
(-3)
M 		57.4
(-2.6)
P 		656
(2.9)
P 		668.9
(3)
P 		659
C 12.6
(-2.9)
A 		17.5
(-2.9)
A 		1.8
(-3)
A 		44.5
(-2.6)
P 		493.5
(1.6)
P 		649.7
(3)
P 		648
avr 9.4
(-3) 		11.1
(-3) 		7.5
(-3) 		53.4
(-2.5) 		517.1
(2.4) 		573.8
(3) 		566
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172546_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4467
Sequence Type Exemplar sequence
Representative Public ID F11G11.8 NCBI
Target Description F11G11.8 /REP_DB=WormBase Gene ID /WP=CE02882 /TR=Q22693 /GB=AAB37838.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062470(9), NM_062474(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062470 NCBI Caenorhabditis elegans T23B7.1 (T23B7.1) mRNA, complete cds. 9/11 A 
NM_062474 NCBI Caenorhabditis elegans F11G11.8 (F11G11.8) mRNA, complete cds. 11/11 None
SNAP00000005480 ENSEMBL cdna:SNAP chromosome:CEL140:II:4860132:4860347:-1 11/11 None
GENEFINDER00000005501 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4860132:4860347:-1 11/11 None
SNAP00000040845 ENSEMBL cdna:SNAP chromosome:CEL140:II:4842595:4842810:1 9/11 None
GENEFINDER00000040847 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4842595:4842810:1 9/11 None
T23B7.1 ENSEMBL cdna:known chromosome:CEL140:II:4842595:4842810:1 gene:T23B7.1 9/11 A 
F11G11.8 ENSEMBL cdna:known chromosome:CEL140:II:4860132:4860347:-1 gene:F11G11.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_068329 3/11 Cross Hyb Matching Probes A 
NM_069362 1/11 Cross Hyb Matching Probes A 
GENEFINDER00000024763 2/11 Cross Hyb Matching Probes None
SNAP00000024738 2/11 Cross Hyb Matching Probes None
SNAP00000004248 1/11 Cross Hyb Matching Probes None
GENEFINDER00000004271 1/11 Cross Hyb Matching Probes None
SNAP00000024206 3/11 Cross Hyb Matching Probes None
SNAP00000024208 5/11 Cross Hyb Matching Probes None
GENEFINDER00000024211 3/11 Cross Hyb Matching Probes None
GENEFINDER00000024214 5/11 Cross Hyb Matching Probes None
ZK337.1c.2 1/11 Cross Hyb Matching Probes None
C24D10.7 3/11 Cross Hyb Matching Probes A 
K07F5.5.2 1/11 Cross Hyb Matching Probes A 
K07F5.5.1 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4842593-4842809(+) 99.07 99.07
chrIV:5162821-5163037(-) 91.67 91.67
chrIV:5165506-5165722(-) 92.13 92.13
chrII:4860130-4860346(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl T23B7.1
F11G11.8
Entrez Gene 173835 Entrez gene
173837 Entrez gene
SwissProt Q22693 EMBL-EBI
WormBase CE02882 Wormbase
CE02882 Wormbase
Functional Annotations
Protein Domains
Database ID Description E-Value
Pfam IPR008498 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF780 3.7E-51
Sequence
Target Sequence 
>C. ELEGANS:172546_X_AT
atggcggacaagtcggcttacatgggcgctggaggctatggatcaggctacatgggatcc
aatgcctcgtcgtcgggatatgcccgcgaagactatgcacaaggaggaaatggtggtgga
caacaacagcagaaccagggttccggaggaaacaccaacccaggtggacaggtcttcaag
gcccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCGGACAAGTCGGCTTACATGG 595 53 13 Antisense
CTTACATGGGCGCTGGAGGCTATGG 431 221 29 Antisense
GAGGCTATGGATCAGGCTACATGGG 218 405 44 Antisense
TACATGGGATCCAATGCCTCGTCGT 584 641 61 Antisense
CTCGTCGTCGGGATATGCCCGCGAA 637 217 78 Antisense
GCCCGCGAAGACTATGCACAAGGAG 588 285 94 Antisense
TGGTGGTGGACAACAACAGCAGAAC 321 553 123 Antisense
ACAGCAGAACCAGGGTTCCGGAGGA 35 109 138 Antisense
TCCGGAGGAAACACCAACCCAGGTG 525 265 154 Antisense
ACCAACCCAGGTGGACAGGTCTTCA 454 83 166 Antisense
CAGGTGGACAGGTCTTCAAGGCCCG 455 207 173 Antisense
Sequence Source Affymetrix Proprietary Database