[Home] | [Total List]

[172545_x_at]

Description W08E12.4 /REP_DB=WormBase Gene ID /WP=CE21277 /TR=Q9N2L6 /GB=AAF39987.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      6grp_highest_nonorm > 55      6grp_total > 83      4grp_total > 49      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3618
1 2 3 4 range
A 6.4
(-3)
A 		3623.3
(3)
P 		2627.6
(1.3)
P 		12.1
(-3)
A 		3617
B 5.2
(-3)
A 		3117.8
(3)
P 		2594.8
(2)
P 		27.2
(-3)
A 		3113
C 10.4
(-3)
A 		2946.9
(3)
P 		2618.7
(2.3)
P 		73.4
(-2.9)
A 		2937
avr 7.3
(-3) 		3229.3
(3) 		2613.7
(1.9) 		37.6
(-2.9) 		3222

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2045
1 2 3 4 5 6 range
A 1036
(-3)
P 		2369.9
(2)
P 		1459.2
(-1.4)
P 		2504.8
(2.5)
P 		2641.4
(3)
P 		2133.7
(1.1)
P 		1605
B 965.7
(-3)
P 		1963
(0)
P 		1497.2
(-1.4)
P 		1966.1
(0)
P 		2938.9
(3)
P 		1772.6
(-0.5)
P 		1973
C 893.7
(-3)
P 		2141
(1.4)
P 		1885.5
(0.5)
P 		2267.4
(1.9)
P 		2582.3
(3)
P 		1496.2
(-0.9)
P 		1689
avr 965.1
(-3) 		2158
(1.1) 		1614
(-0.8) 		2246.1
(1.4) 		2720.9
(3) 		1800.8
(-0.1) 		1756
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 911
1 2 3 4 range
A 2.3
(-3)
A 		786.5
(3)
P 		686.9
(2.2)
P 		1.8
(-3)
A 		785
B 1.7
(-3)
A 		770
(3)
P 		601.3
(1.7)
P 		5.8
(-3)
A 		768
C 3.4
(-3)
A 		847.3
(2.6)
P 		912.7
(3)
P 		12.4
(-2.9)
A 		909
avr 2.5
(-3) 		801.3
(3) 		733.6
(2.5) 		6.7
(-3) 		799

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1003
1 2 3 4 5 6 range
A 191
(-3)
P 		842.9
(3)
P 		317.8
(-1.8)
P 		635.3
(1.1)
P 		797.1
(2.6)
P 		519.5
(0)
P 		652
B 336
(-3)
P 		653.4
(-0.8)
P 		363.6
(-2.8)
P 		520.7
(-1.7)
P 		1194
(3)
P 		661
(-0.7)
P 		858
C 331.2
(-3)
P 		653.3
(0.8)
P 		479.9
(-1.2)
P 		456
(-1.5)
P 		835.6
(3)
P 		500.8
(-1)
P 		504
avr 286.1
(-3) 		716.5
(0.9) 		387.1
(-2.1) 		537.3
(-0.7) 		942.2
(3) 		560.4
(-0.5) 		656
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172545_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10633
Sequence Type Exemplar sequence
Representative Public ID W08E12.4 NCBI
Target Description W08E12.4 /REP_DB=WormBase Gene ID /WP=CE21277 /TR=Q9N2L6 /GB=AAF39987.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067913(11), NM_067912(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067913 NCBI Caenorhabditis elegans W08E12.4 (W08E12.4) mRNA, complete cds. 11/11 None
NM_067912 NCBI Caenorhabditis elegans W08E12.5 (W08E12.5) mRNA, complete cds. 11/11 None
SNAP00000023321 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3300766:3301296:1 11/11 None
SNAP00000023322 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3302412:3302888:1 11/11 None
GENEFINDER00000023329 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3300820:3301296:1 11/11 None
GENEFINDER00000023334 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3302412:3302888:1 11/11 None
W08E12.5 ENSEMBL cdna:known chromosome:CEL140:IV:3300820:3301296:1 gene:W08E12.5 11/11 None
W08E12.4 ENSEMBL cdna:known chromosome:CEL140:IV:3302412:3302888:1 gene:W08E12.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067914 5/11 Cross Hyb Matching Probes A 
SNAP00000023323 4/11 Cross Hyb Matching Probes None
GENEFINDER00000023327 4/11 Cross Hyb Matching Probes None
W08E12.3 5/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3300825-3301302(+) 100.0 100.0
chrIV:3302417-3302894(+) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl W08E12.5
W08E12.4
Entrez Gene 189292 Entrez gene
189293 Entrez gene
SwissProt Q9N2L6 EMBL-EBI
WormBase CE21277 Wormbase
CE21277 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF39986 Hypothetical protein W08E12.5 [Caenorhabditis elegans] gb|AAF39987.1| Hypothetical protein W08E12.4 [Caenorhabditis elegans] ref|NP_500313.1| W08E12.5 [Caenorhabditis elegans] ref|NP_500314.1| W08E12.4 [Caenorhabditis elegans] 5.0E-29
blast AAF39986 Hypothetical protein W08E12.5 [Caenorhabditis elegans] gb|AAF39987.1| Hypothetical protein W08E12.4 [Caenorhabditis elegans] ref|NP_500313.1| W08E12.5 [Caenorhabditis elegans] ref|NP_500314.1| W08E12.4 [Caenorhabditis elegans] 9.0E-29
blast AAF39988 Hypothetical protein W08E12.3 [Caenorhabditis elegans] ref|NP_500315.1| W08E12.3 [Caenorhabditis elegans] 5.0E-23
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000023321 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:172545_X_AT
cgtcggctcaatgcttcgaaggtggatgcggaggaggaccaatcttccttccaccaccac
catgcttcggaggaaactgtggtggatgttcgggtaacaactgtggatgcaatggaaaca
actgtggaccacaagtcactgttgtccaggtcccaaataacaataacggatgctcatgca
gcccatgcaatggaccaatttgtgctccaatgtgcaatagctgcccaccacagccgatct
tcattcagccatctcaatgctgcaataataacaacttctcctgttgcccattccgtttcc
gtcgtcataactctgctgctgctgccgcttcagatgagatcaccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTCGGCTCAATGCTTCGAAGGTGG 9 245 59 Antisense
TGCGGAGGAGGACCAATCTTCCTTC 57 581 85 Antisense
CACCACCATGCTTCGGAGGAAACTG 190 201 113 Antisense
GGACCACAAGTCACTGTTGTCCAGG 117 523 184 Antisense
CACTGTTGTCCAGGTCCCAAATAAC 105 199 195 Antisense
AATAACGGATGCTCATGCAGCCCAT 618 171 220 Antisense
GGACCAATTTGTGCTCCAATGTGCA 275 523 250 Antisense
GCTCCAATGTGCAATAGCTGCCCAC 597 297 262 Antisense
ATCTTCATTCAGCCATCTCAATGCT 318 31 295 Antisense
TAATAACAACTTCTCCTGTTGCCCA 143 635 324 Antisense
GCTGCCGCTTCAGATGAGATCACCG 482 297 379 Antisense
Sequence Source Affymetrix Proprietary Database