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[172544_x_at]

Description F11G11.6 /REP_DB=WormBase Gene ID /WP=CE07059 /TR=P91244 /GB=AAB37836.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 66      4grp_total > 11      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 0.6
(-3)
A 		3.4
(-2.3)
A 		0.8
(-2.9)
A 		23.5
(3)
A 		23
B 9.2
(-1.7)
A 		24
(3)
A 		5.2
(-3)
A 		9.8
(-1.5)
A 		19
C 13.2
(-1.5)
A 		1.1
(-3)
A 		1.7
(-2.9)
A 		50.1
(3)
P 		49
avr 7.7
(-1.8) 		9.5
(-1.4) 		2.6
(-3) 		27.8
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 2.7
(-2.2)
A 		0.4
(-3)
A 		10.8
(0.4)
A 		10.7
(0.4)
A 		3.5
(-2)
A 		18.5
(3)
A 		18
B 11.6
(1.8)
A 		14.3
(3)
A 		1.7
(-2.5)
A 		12.9
(2.4)
A 		0.6
(-3)
A 		8.4
(0.4)
A 		14
C 1.4
(-2.6)
A 		8
(-0.4)
A 		4.3
(-1.6)
A 		12.9
(1.3)
A 		0.2
(-3)
A 		17.9
(3)
A 		18
avr 5.2
(-1.3) 		7.6
(-0.2) 		5.6
(-1.1) 		12.2
(1.8) 		1.4
(-3) 		14.9
(3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.2
(-3)
A 		0.7
(-2.1)
A 		0.2
(-3)
A 		3.4
(3)
A 		3
B 2.9
(-0.8)
A 		5.9
(3)
A 		1.2
(-3)
A 		2.1
(-1.9)
A 		5
C 4.4
(0)
A 		0.3
(-3)
A 		0.6
(-2.8)
A 		8.4
(3)
P 		8
avr 2.5
(-0.2) 		2.3
(-0.5) 		0.7
(-3) 		4.6
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.5
(-2.5)
A 		0.1
(-3)
A 		2.4
(0.1)
A 		2.7
(0.5)
A 		1.1
(-1.6)
A 		4.5
(3)
A 		4
B 4
(2.1)
A 		4.7
(3)
A 		0.4
(-2.7)
A 		3.4
(1.3)
A 		0.2
(-3)
A 		3.1
(0.9)
A 		5
C 0.5
(-2.6)
A 		2.4
(-0.7)
A 		1.1
(-2)
A 		2.6
(-0.5)
A 		0.1
(-3)
A 		6
(3)
A 		6
avr 1.7
(-1.2) 		2.4
(-0.2) 		1.3
(-1.8) 		2.9
(0.6) 		0.5
(-3) 		4.5
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172544_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5659
Sequence Type Exemplar sequence
Representative Public ID F11G11.6 NCBI
Target Description F11G11.6 /REP_DB=WormBase Gene ID /WP=CE07059 /TR=P91244 /GB=AAB37836.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) F11G11.6
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F11G11.6 F11G11.6 /REP_DB=WormBase Gene ID /WP=CE07059 /TR=P91244 /GB=AAB37836.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4856479-4856734(+) 16.48 93.41
Sequence
Target Sequence 
>C. ELEGANS:172544_X_AT
gttttagctaaattccaatcacagaaagctctgaattttctttctgctattaccttttac
gtcaaaaatacggtacccggtctcgacacgacaaaaaaactgaaaattctaaaaaaaaaa
ctttcgaatttccatcaatttttcattttttttttgattaaaataataattttaacaaat
cgcgagaaacattatagaaaatcgattaaaattccacaacaacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTTAGCTAAATTCCAATCACAGA 264 449 22 Antisense
AAATTCCAATCACAGAAAGCTCTGA 366 115 31 Antisense
AAAGCTCTGAATTTTCTTTCTGCTA 86 125 46 Antisense
GAATTTTCTTTCTGCTATTACCTTT 393 325 54 Antisense
TTCTTTCTGCTATTACCTTTTACGT 485 689 59 Antisense
TTCTGCTATTACCTTTTACGTCAAA 262 693 63 Antisense
TGCTATTACCTTTTACGTCAAAAAT 13 577 66 Antisense
CGGTCTCGACACGACAAAAAAACTG 456 243 99 Antisense
GAATTTCCATCAATTTTTCATTTTT 603 325 147 Antisense
AACAAATCGCGAGAAACATTATAGA 699 127 195 Antisense
ATCGATTAAAATTCCACAACAACAA 515 33 222 Antisense
Sequence Source Affymetrix Proprietary Database