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[172542_at]

Description C47C12.2 /REP_DB=WormBase Gene ID /WP=CE08795 /TR=Q94179 /GB=AAB07571.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 8.3
(-0.6)
A 		10
(-0.1)
A 		0.6
(-3)
A 		20.1
(3)
A 		20
B 1.6
(-3)
A 		10.3
(3)
A 		5.9
(-0)
A 		6.4
(0.3)
A 		9
C 1.4
(-3)
A 		23.8
(3)
A 		9.5
(-0.8)
A 		18.7
(1.6)
A 		22
avr 3.8
(-3) 		14.7
(2.8) 		5.3
(-2.2) 		15.1
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 1.9
(-2.8)
A 		0.9
(-2.9)
A 		1.1
(-2.9)
A 		0.6
(-3)
A 		32.2
(3)
A 		10.8
(-1.1)
A 		32
B 9.3
(-1.2)
A 		14.7
(0.3)
A 		3.8
(-2.7)
A 		24.4
(3)
A 		5.3
(-2.3)
A 		2.8
(-3)
A 		22
C 17.1
(3)
A 		13.3
(1.6)
A 		1.1
(-3)
A 		2.3
(-2.6)
A 		9.4
(0.1)
A 		1.1
(-3)
A 		16
avr 9.4
(0.3) 		9.6
(0.4) 		2
(-3) 		9.1
(0.1) 		15.6
(3) 		4.9
(-1.7) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 3
(3)
A 		2.2
(1.3)
A 		0.1
(-3)
A 		2.9
(2.8)
A 		3
B 0.5
(-3)
A 		2.6
(3)
A 		1.4
(-0.4)
A 		1.4
(-0.4)
A 		2
C 0.5
(-3)
A 		6.8
(3)
A 		3.3
(-0.3)
A 		3.2
(-0.4)
A 		6
avr 1.3
(-3) 		3.9
(3) 		1.6
(-2.3) 		2.5
(-0.2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.4
(-2.8)
A 		0.3
(-2.9)
A 		0.2
(-2.9)
A 		0.1
(-3)
A 		9.7
(3)
A 		2.6
(-1.4)
A 		10
B 3.2
(-0.5)
A 		4.9
(1.3)
A 		0.9
(-3)
A 		6.5
(3)
A 		2.2
(-1.6)
A 		1
(-2.9)
A 		6
C 6.3
(3)
A 		4.1
(0.8)
A 		0.3
(-3)
A 		0.5
(-2.8)
A 		3
(-0.3)
A 		0.4
(-2.9)
A 		6
avr 3.3
(0.7) 		3.1
(0.5) 		0.5
(-3) 		2.4
(-0.5) 		5
(3) 		1.3
(-1.9) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172542_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16449
Sequence Type Exemplar sequence
Representative Public ID C47C12.2 NCBI
Target Description C47C12.2 /REP_DB=WormBase Gene ID /WP=CE08795 /TR=Q94179 /GB=AAB07571.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076908(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076908 NCBI Caenorhabditis elegans C47C12.2 (C47C12.2) mRNA, complete cds. 11/11 None
C47C12.2 ENSEMBL cdna:known chromosome:CEL140:X:7753919:7754223:1 gene:C47C12.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000037139 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7753917-7754222(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C47C12.2
Entrez Gene 183538 Entrez gene
SwissProt Q94179 EMBL-EBI
WormBase CE08795 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB07571 Hypothetical protein C47C12.2 [Caenorhabditis elegans] ref|NP_509309.1| C47C12.2 [Caenorhabditis elegans] 4.0E-34
Sequence
Target Sequence 
>C. ELEGANS:172542_AT
atgttgttttcagaagaagctgcaagagtacttatccatagtacagacgacgcacaagaa
cagaggatgggagcggaaaatcaagctccgaaaacgcgggatgctgtcaaaaaagtttta
tgtcttcttcaaatttcaagtttgttctcaaaatttcatctttcaaagaacacagaaaat
gctataacaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTTGTTTTCAGAAGAAGCTGCAA 546 15 13 Antisense
GAAGCTGCAAGAGTACTTATCCATA 544 343 28 Antisense
TTATCCATAGTACAGACGACGCACA 670 677 44 Antisense
CAGACGACGCACAAGAACAGAGGAT 357 205 56 Antisense
GAGGATGGGAGCGGAAAATCAAGCT 477 401 75 Antisense
ATCAAGCTCCGAAAACGCGGGATGC 390 27 92 Antisense
GAAAACGCGGGATGCTGTCAAAAAA 426 353 102 Antisense
AGTTTTATGTCTTCTTCAAATTTCA 56 63 126 Antisense
TTCAAATTTCAAGTTTGTTCTCAAA 120 687 140 Antisense
TGTTCTCAAAATTTCATCTTTCAAA 419 561 155 Antisense
GAACACAGAAAATGCTATAACAACT 401 351 180 Antisense
Sequence Source Affymetrix Proprietary Database