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[172539_x_at]

Description F49C12.11 /REP_DB=WormBase Gene ID /WP=CE03371 /TR=Q20588 /GB=CAA92514.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 35      6grp_high1_10_10 > 53      4grp_highest_8_8 > 03      4grp_high_8_8 > 38      6grp_highest_nonorm > 43      6grp_total > 20      4grp_total > 41      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 977
1 2 3 4 range
A 786.9
(-3)
P 		1763.4
(3)
P 		1344.6
(0.4)
P 		1343.9
(0.4)
P 		977
B 793.7
(-3)
P 		1383.5
(0.9)
P 		1692.8
(3)
P 		1228.7
(-0.1)
P 		899
C 1071.3
(-3)
P 		1454.5
(3)
P 		1400.4
(2.2)
P 		1332
(1.1)
P 		383
avr 884
(-3) 		1533.8
(3) 		1479.3
(2.5) 		1301.5
(0.9) 		650

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1062
1 2 3 4 5 6 range
A 843.1
(-3)
P 		1266.5
(-0)
P 		1703
(3)
P 		1388.2
(0.8)
P 		965.5
(-2.1)
P 		867.6
(-2.8)
P 		860
B 862
(-3)
P 		1506.2
(0.7)
P 		1904.9
(3)
P 		1019.4
(-2.1)
P 		1208.7
(-1)
P 		1125.6
(-1.5)
P 		1043
C 1041.4
(-3)
P 		1417.7
(2.6)
P 		1191.9
(-0.7)
P 		1442.1
(3)
P 		1203.8
(-0.6)
P 		1278.3
(0.5)
P 		401
avr 915.5
(-3) 		1396.8
(1.2) 		1599.9
(3) 		1283.2
(0.2) 		1126
(-1.2) 		1090.5
(-1.5) 		684
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 291
1 2 3 4 range
A 286.5
(-0.1)
P 		382.8
(3)
P 		351.5
(2)
P 		196.7
(-3)
P 		186
B 253.1
(-3)
P 		341.7
(0.8)
P 		392.3
(3)
P 		261.8
(-2.6)
P 		139
C 354.6
(-0)
P 		418.2
(1.4)
P 		488.1
(3)
P 		224.6
(-3)
P 		264
avr 298.1
(-0.7) 		380.9
(2) 		410.6
(3) 		227.7
(-3) 		183

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 346
1 2 3 4 5 6 range
A 155.4
(-3)
P 		450.4
(3)
P 		370.9
(1.4)
P 		352.1
(1)
P 		291.4
(-0.2)
P 		211.2
(-1.9)
P 		295
B 299.9
(-2.2)
P 		501.3
(3)
P 		462.6
(2)
P 		270
(-3)
P 		491.1
(2.7)
P 		419.7
(0.9)
P 		231
C 386
(1)
P 		432.6
(3)
P 		303.3
(-2.4)
P 		290
(-3)
P 		389.5
(1.2)
P 		427.9
(2.8)
P 		143
avr 280.4
(-3) 		461.4
(3) 		378.9
(0.3) 		304
(-2.2) 		390.7
(0.7) 		352.9
(-0.6) 		181
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172539_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9041
Sequence Type Exemplar sequence
Representative Public ID F49C12.11 NCBI
Target Description F49C12.11 /REP_DB=WormBase Gene ID /WP=CE03371 /TR=Q20588 /GB=CAA92514.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069233(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069233 NCBI Caenorhabditis elegans F49C12.11 (F49C12.11) mRNA, complete cds. 11/11 None
SNAP00000032699 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9319369:9319943:1 11/11 None
GENEFINDER00000032706 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9319369:9319943:1 11/11 None
F49C12.11.2 ENSEMBL cdna:known chromosome:CEL140:IV:9319355:9320498:1 gene:F49C12.11 11/11 None
F49C12.11.1 ENSEMBL cdna:known chromosome:CEL140:IV:9319357:9320124:1 gene:F49C12.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9319374-9319949(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F49C12.11
Entrez Gene 177756 Entrez gene
SwissProt Q20588 EMBL-EBI
WormBase CE03371 Wormbase
Sequence
Target Sequence 
>C. ELEGANS:172539_X_AT
atgtccggacgtcaaggaggaaaggcaaagccactgaaggccgcaaaaaaaacggagaag
gatctttctgaggaagacgtcgagttcaagaagaagcaacaagaggaagccaaaaagatc
aaggagatggcagccaaggctggacaacgtggaccacttctcggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCCGGACGTCAAGGAGGAAAGG 348 45 13 Antisense
AAGGCAAAGCCACTGAAGGCCGCAA 269 159 34 Antisense
GCCACTGAAGGCCGCAAAAAAAACG 227 275 42 Antisense
AAAACGGAGAAGGATCTTTCTGAGG 31 117 61 Antisense
GGATCTTTCTGAGGAAGACGTCGAG 498 511 72 Antisense
GAAGACGTCGAGTTCAAGAAGAAGC 601 339 85 Antisense
GAAGAAGCAACAAGAGGAAGCCAAA 536 337 102 Antisense
AGATCAAGGAGATGGCAGCCAAGGC 481 65 128 Antisense
GCAGCCAAGGCTGGACAACGTGGAC 182 311 142 Antisense
AAGGCTGGACAACGTGGACCACTTC 133 161 148 Antisense
TGGACAACGTGGACCACTTCTCGGT 657 545 153 Antisense
Sequence Source Affymetrix Proprietary Database