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[172538_x_at] 7TM chemoreceptor, srw family

Description H05B21.3 /REP_DB=WormBase Gene ID /WP=CE17953 /TR=O61970 /GB=AAC17762.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 02      6grp_cgc > 95      6grp_cgc_sub > 04      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 137
1 2 3 4 range
A 30.3
(-1.7)
A 		4.6
(-3)
A 		14.7
(-2.5)
A 		120.5
(3)
M 		116
B 5.5
(-3)
A 		25.3
(-1.4)
A 		25.1
(-1.5)
A 		81.5
(3)
A 		76
C 1.8
(-3)
A 		8.4
(-2.7)
A 		0.9
(-3)
A 		137.5
(3)
P 		137
avr 12.5
(-3) 		12.8
(-3) 		13.6
(-2.9) 		113.2
(3) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 26.8
(3)
A 		3.3
(-2.8)
A 		19.3
(1.2)
A 		2.4
(-3)
A 		12.4
(-0.5)
A 		4.1
(-2.6)
A 		24
B 14.1
(-1.6)
A 		29.7
(0.9)
A 		5.7
(-3)
A 		42.8
(3)
A 		12.9
(-1.8)
A 		6.9
(-2.8)
A 		37
C 2.1
(-2.8)
A 		17.2
(2.5)
A 		1.4
(-3)
A 		18.7
(3)
A 		4.5
(-1.9)
A 		7.7
(-0.8)
A 		17
avr 14.3
(0.2) 		16.7
(1.2) 		8.8
(-2) 		21.3
(3) 		9.9
(-1.5) 		6.2
(-3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 11
(0.6)
A 		1
(-3)
A 		3.8
(-2)
A 		17.6
(3)
M 		17
B 1.8
(-3)
A 		6.2
(-1.3)
A 		5.8
(-1.5)
A 		17.4
(3)
A 		16
C 0.6
(-2.9)
A 		2.4
(-2.4)
A 		0.3
(-3)
A 		23.2
(3)
P 		23
avr 4.5
(-2.5) 		3.2
(-3) 		3.3
(-3) 		19.4
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 4.9
(3)
A 		1.2
(-2.2)
A 		4.2
(2)
A 		0.6
(-3)
A 		3.8
(1.5)
A 		1
(-2.4)
A 		4
B 4.9
(-0.9)
A 		9.9
(2.2)
A 		1.4
(-3)
A 		11.3
(3)
A 		5.3
(-0.6)
A 		2.6
(-2.3)
A 		10
C 0.8
(-2.5)
A 		5.2
(3)
A 		0.4
(-3)
A 		3.8
(1.3)
A 		1.5
(-1.6)
A 		2.6
(-0.3)
A 		5
avr 3.5
(-0.4) 		5.4
(3) 		2
(-3) 		5.2
(2.6) 		3.5
(-0.4) 		2.1
(-2.8) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172538_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15232
Sequence Type Exemplar sequence
Representative Public ID H05B21.3 NCBI
Target Description H05B21.3 /REP_DB=WormBase Gene ID /WP=CE17953 /TR=O61970 /GB=AAC17762.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071403(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071403 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-142) (srw-142) mRNA, complete cds. 11/11 None
H05B21.3 ENSEMBL cdna:known chromosome:CEL140:V:2956843:2958129:-1 gene:H05B21.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071396 2/11 Cross Hyb Matching Probes A 
GENEFINDER00000017555 7/11 Cross Hyb Matching Probes None
GENEFINDER00000017836 2/11 Cross Hyb Matching Probes None
H27D07.2 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2956842-2958129(-) 100.0 100.0
chrV:2937137-2938424(-) 95.55 95.55
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-142
Ensembl H05B21.3
Entrez Gene 186692 Entrez gene
SwissProt O61970 EMBL-EBI
WormBase CE34567 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17762 Serpentine receptor, class w protein 142 [Caenorhabditis elegans] ref|NP_503804.2| Serpentine Receptor, class W family member (srw-142) [Caenorhabditis elegans] 0.0
blast AAG24154 Serpentine receptor, class w protein 141 [Caenorhabditis elegans] ref|NP_503797.1| Serpentine Receptor, class W family member (srw-141) [Caenorhabditis elegans] 0.0
blast AAG24155 Serpentine receptor, class w protein 143 [Caenorhabditis elegans] ref|NP_503798.2| Serpentine Receptor, class W family member (srw-143) [Caenorhabditis elegans] 1.0E-121
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503804.2 6 36-58,68-85,158-180,222-244,273-295,310-332
H05B21.3 6 36-58,68-85,158-180,222-244,273-295,310-332
Sequence
Target Sequence 
>C. ELEGANS:172538_X_AT
cctacctcatttttagcaattattgttgtatcattagttttttgtcctatttcaataagc
acatttttggaatatgatattttctctgaaaaatacaaatcaacatgcaatccaaaagga
gtattatcttactatctttacatatcagacttatttgaaagaaataatgaagttattttg
aaatatgttactttagttaatgcaatggtgtcaaatataatcccatgttttcttttccct
gttgtgacgtttttattagtgaaagagttatggaaaaacgaaattaatcgagggcgatta
ttatcttcaaaaaaagtgaacgactctataaagagcactcaactggttttattattaacc
agtatgtttttcatcgcccaatttcccattggaattgccaacggtgtttcttatttcttc
gataaaaatcccggaatcacaaagatatttcacgaaatcatgtttctcttttctattatg
cttgttctcaatacaatctctcattttttcatatgcattcttatatcgtcacgttatcgc
gcggaagtaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTACCTCATTTTTAGCAATTATTG 199 269 484 Antisense
ATCATTAGTTTTTTGTCCTATTTCA 651 29 513 Antisense
TTATCTTACTATCTTTACATATCAG 189 675 607 Antisense
TTCCCTGTTGTGACGTTTTTATTAG 125 697 718 Antisense
ATTAACCAGTATGTTTTTCATCGCC 594 11 837 Antisense
TTTCATCGCCCAATTTCCCATTGGA 47 673 852 Antisense
GCCAACGGTGTTTCTTATTTCTTCG 579 277 880 Antisense
GTTTCTCTTTTCTATTATGCTTGTT 141 451 945 Antisense
GTTCTCAATACAATCTCTCATTTTT 701 443 967 Antisense
TATGCATTCTTATATCGTCACGTTA 46 657 995 Antisense
GTCACGTTATCGCGCGGAAGTAAAG 216 461 1011 Antisense
Sequence Source Affymetrix Proprietary Database