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[172537_x_at]

Description Y45F10B.3 /REP_DB=WormBase Gene ID /WP=CE18402 /TR=O62468 /GB=CAA16354.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 20      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 11.8
(-2.6)
A 		43.3
(3)
A 		9.5
(-3)
A 		14.9
(-2)
A 		34
B 22
(3)
A 		10.5
(-3)
A 		10.6
(-2.9)
A 		15.6
(-0.3)
A 		12
C 11.7
(-2.1)
A 		10.5
(-2.2)
A 		2.4
(-3)
A 		64.4
(3)
A 		62
avr 15.2
(-1.1) 		21.4
(0.5) 		7.5
(-3) 		31.6
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 250
1 2 3 4 5 6 range
A 5.7
(-3)
A 		7.1
(-3)
A 		33.9
(-2.1)
A 		60.8
(-1.3)
A 		196.3
(2.9)
A 		198.9
(3)
A 		193
B 9.7
(-3)
A 		9.3
(-3)
A 		13.4
(-2.9)
A 		8.9
(-3)
A 		119.5
(0.4)
A 		205.5
(3)
M 		197
C 5.2
(-3)
A 		33.8
(-2.3)
A 		10.4
(-2.9)
A 		5.9
(-3)
A 		129
(-0)
A 		254.9
(3)
P 		250
avr 6.9
(-3) 		16.7
(-2.7) 		19.2
(-2.7) 		25.2
(-2.5) 		148.3
(1) 		219.8
(3) 		213
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 4.3
(-1.3)
A 		9.4
(3)
A 		2.5
(-2.8)
A 		2.2
(-3)
A 		7
B 7
(3)
A 		2.6
(-2.7)
A 		2.4
(-3)
A 		3.3
(-1.8)
A 		5
C 3.9
(-1.2)
A 		3
(-1.7)
A 		0.8
(-3)
A 		10.9
(3)
A 		10
avr 5.1
(2.3) 		5
(2.2) 		1.9
(-3) 		5.5
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 1.1
(-3)
A 		2.5
(-2.9)
A 		7.4
(-2.3)
A 		15.4
(-1.5)
A 		59.2
(3)
A 		48.4
(1.9)
A 		58
B 3.4
(-2.9)
A 		3.1
(-2.9)
A 		3.3
(-2.9)
A 		2.4
(-3)
A 		48.6
(0.7)
A 		76.6
(3)
M 		74
C 1.9
(-3)
A 		10.3
(-2.4)
A 		2.7
(-2.9)
A 		1.2
(-3)
A 		41.8
(-0.1)
A 		85.3
(3)
P 		84
avr 2.1
(-3) 		5.3
(-2.7) 		4.5
(-2.8) 		6.3
(-2.6) 		49.9
(1.2) 		70.1
(3) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172537_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8478
Sequence Type Exemplar sequence
Representative Public ID Y45F10B.3 NCBI
Target Description Y45F10B.3 /REP_DB=WormBase Gene ID /WP=CE18402 /TR=O62468 /GB=CAA16354.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070221(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070221 NCBI Caenorhabditis elegans Y45F10B.3 (Y45F10B.3) mRNA, complete cds. 11/11 None
SNAP00000007860 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13593620:13593847:1 11/11 None
GENEFINDER00000007867 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13593620:13593847:1 11/11 None
Y45F10B.3 ENSEMBL cdna:known chromosome:CEL140:IV:13593620:13593847:1 gene:Y45F10B.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028154 1/11 Cross Hyb Matching Probes None
NM_070250 6/11 Cross Hyb Matching Probes A 
NM_001028257 1/11 Cross Hyb Matching Probes None
SNAP00000017717 6/11 Cross Hyb Matching Probes None
GENEFINDER00000017720 6/11 Cross Hyb Matching Probes None
SNAP00000027574 1/11 Cross Hyb Matching Probes None
GENEFINDER00000027582 1/11 Cross Hyb Matching Probes None
SNAP00000033713 1/11 Cross Hyb Matching Probes None
GENEFINDER00000033791 1/11 Cross Hyb Matching Probes None
C47A4.5 6/11 Cross Hyb Matching Probes A 
M199.8 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13593625-13593853(+) 100.0 100.0
chrIV:13745683-13745911(+) 97.37 97.37
Public Domain and Genome References
Gene Title
Ensembl Y45F10B.3
Entrez Gene 189914 Entrez gene
SwissProt O62468 EMBL-EBI
WormBase CE18402 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16354 Hypothetical protein Y45F10B.3 [Caenorhabditis elegans] ref|NP_502622.1| Y45F10B.3 [Caenorhabditis elegans] 1.0E-10
blast CAB62795 Hypothetical protein C47A4.5 [Caenorhabditis elegans] ref|NP_502651.1| C47A4.5 [Caenorhabditis elegans] 1.0E-10
blast CAE68189 Hypothetical protein CBG13849 [Caenorhabditis briggsae] 1.0E-10
Sequence
Target Sequence 
>C. ELEGANS:172537_X_AT
cagacaaatcagctttcgtgccagtcgatgcaatcggaaaccacaagaacacggatcttg
acgtcgacatcgacgacgaattgttcggaaagaagccgccaaagactgccgaagcgccga
agccagctcctcctccaccggctccagctccagccgccgctccatctgcaggaaagtatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGACAAATCAGCTTTCGTGCCAGT 538 203 17 Antisense
GCTTTCGTGCCAGTCGATGCAATCG 272 305 28 Antisense
GCCAGTCGATGCAATCGGAAACCAC 154 281 36 Antisense
ATCGGAAACCACAAGAACACGGATC 533 33 49 Antisense
GAACACGGATCTTGACGTCGACATC 638 351 63 Antisense
ACGGATCTTGACGTCGACATCGACG 544 95 67 Antisense
TCGACATCGACGACGAATTGTTCGG 19 603 80 Antisense
GAATTGTTCGGAAAGAAGCCGCCAA 188 323 94 Antisense
GAAAGAAGCCGCCAAAGACTGCCGA 423 359 104 Antisense
CGCCAAAGACTGCCGAAGCGCCGAA 315 257 113 Antisense
GCCGCTCCATCTGCAGGAAAGTATC 465 285 172 Antisense
Sequence Source Affymetrix Proprietary Database