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[172536_x_at]

Description Y71A12B.7 /REP_DB=WormBase Gene ID /WP=CE26240 /TR=Q9GRV3 /GB=CAC14422.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 77      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_highest_nonorm > 90      6grp_total > 78      4grp_total > 18      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 93.4
(-3)
P 		118.8
(-0.6)
P 		124.6
(-0.1)
P 		157.2
(3)
P 		64
B 87
(-1.7)
P 		97.9
(-0.6)
P 		73.7
(-3)
P 		134.6
(3)
P 		61
C 114.9
(-1.6)
P 		131.1
(-0.9)
P 		79.2
(-3)
P 		228.1
(3)
P 		149
avr 98.4
(-2.6) 		115.9
(-1.3) 		92.5
(-3) 		173.3
(3) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 120.7
(-2)
P 		109.1
(-2.7)
P 		104.5
(-3)
P 		103.7
(-3)
P 		145.6
(-0.6)
P 		206.7
(3)
P 		103
B 91.8
(-3)
P 		113.3
(-1.9)
P 		112.3
(-1.9)
P 		105.3
(-2.3)
P 		109.9
(-2)
P 		204.7
(3)
P 		113
C 116.6
(-2.8)
P 		136.5
(-1.5)
P 		112.7
(-3)
P 		117.5
(-2.7)
P 		137.8
(-1.4)
P 		208
(3)
P 		95
avr 109.7
(-2.9) 		119.6
(-2.3) 		109.8
(-2.9) 		108.8
(-3) 		131.1
(-1.6) 		206.5
(3) 		98
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 34
(3)
P 		25.8
(-1.5)
P 		32.6
(2.2)
P 		23
(-3)
P 		11
B 27.7
(2.5)
P 		24.2
(0.7)
P 		17.1
(-3)
P 		28.7
(3)
P 		12
C 38
(2.7)
P 		37.7
(2.6)
P 		27.6
(-3)
P 		38.5
(3)
P 		11
avr 33.2
(3) 		29.2
(-0.2) 		25.8
(-3) 		30.1
(0.5) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 22.3
(-3)
P 		38.8
(0.5)
P 		22.8
(-2.9)
P 		26.3
(-2.1)
P 		43.9
(1.6)
P 		50.3
(3)
P 		28
B 31.9
(-2.4)
P 		37.7
(-1.7)
P 		27.3
(-3)
P 		27.9
(-2.9)
P 		44.7
(-0.9)
P 		76.3
(3)
P 		49
C 43.2
(-0.4)
P 		41.7
(-0.6)
P 		28.7
(-2.3)
P 		23.6
(-3)
P 		44.6
(-0.3)
P 		69.6
(3)
P 		46
avr 32.5
(-2) 		39.4
(-0.9) 		26.3
(-2.9) 		25.9
(-3) 		44.4
(-0.2) 		65.4
(3) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172536_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2396
Sequence Type Exemplar sequence
Representative Public ID Y71A12B.7 NCBI
Target Description Y71A12B.7 /REP_DB=WormBase Gene ID /WP=CE26240 /TR=Q9GRV3 /GB=CAC14422.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074115(9), NM_061031(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074115 NCBI Caenorhabditis elegans T16A9.1 (T16A9.1) mRNA, complete cds. 9/11 A 
NM_061031 NCBI Caenorhabditis elegans Y71A12B.7 (Y71A12B.7) mRNA, complete cds. 11/11 A 
SNAP00000038367 ENSEMBL cdna:SNAP chromosome:CEL140:I:13938164:13942592:1 10/11 None
GENEFINDER00000038392 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13938164:13942774:1 10/11 None
Y71A12B.7 ENSEMBL cdna:known chromosome:CEL140:I:13938164:13943022:1 gene:Y71A12B.7 11/11 A 
Y55H10B.1 ENSEMBL cdna:known chromosome:CEL140:IV:3314464:3317258:1 gene:Y55H10B.1 9/11 A 
T16A9.1 ENSEMBL cdna:known chromosome:CEL140:V:14204007:14206640:-1 gene:T16A9.1 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067919 8/11 Cross Hyb Matching Probes A 
NM_075057 8/11 Cross Hyb Matching Probes A 
SNAP00000034693 8/11 Cross Hyb Matching Probes None
GENEFINDER00000034695 8/11 Cross Hyb Matching Probes None
SNAP00000036503 8/11 Cross Hyb Matching Probes None
GENEFINDER00000036619 8/11 Cross Hyb Matching Probes None
SNAP00000009855 7/11 Cross Hyb Matching Probes None
GENEFINDER00000009867 6/11 Cross Hyb Matching Probes None
SNAP00000032387 8/11 Cross Hyb Matching Probes None
GENEFINDER00000032394 8/11 Cross Hyb Matching Probes None
F57G4.3 8/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title

Ensembl Y71A12B.7
Y55H10B.1
T16A9.1
Entrez Gene 179923 Entrez gene
190577 Entrez gene
SwissProt Q22520 EMBL-EBI
Q9GRV3 EMBL-EBI
WormBase CE13720 Wormbase
CE26240 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00875 Hypothetical protein T16A9.1 [Caenorhabditis elegans] ref|NP_506516.1| T16A9.1 [Caenorhabditis elegans] 0.0
blast CAC14422 Hypothetical protein Y71A12B.7 [Caenorhabditis elegans] ref|NP_493432.1| Y71A12B.7 [Caenorhabditis elegans] 0.0
blast AAF60812 Hypothetical protein Y55H10B.1 [Caenorhabditis elegans] ref|NP_500320.1| Y55H10B.1 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:172536_X_AT
acggccaagacgattccgctaactcaagaactacactcaccgagagcgaaaacgaagtga
attttgacaatgaaaccacttcgctgttctcgcctcaaagcacattcacgcctatttttt
cgtcaacgcgcctcgaagagaggcaacttgtggaaagggagctcaaggacaaccatgccg
aagagattcaacttgacgctgacaaggccgacgagagccagctgaacgacagtcgaaggt
cggctagaaatcgtaccagttcaacaattttcgacccgtcgccaactcaaccaaacgatg
atttcgaaatgtctccgagccatagactattgcgttttgacgaaatcattgatctgtggg
atatcgaactgtacaccaatacgactgagagcctcaccttccgggccacactgggaactg
agaacaattattctgtcagacctgataccggaactgtgttgaaaagccgcatattgaaaa
ttcggctcctcaacgatgatgctccaaatgatgttttgacagtcttctacaagacgaaag
tgtttttttcgagacggttcaaaaagcctttagcattataccggtatttcacaacgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGGCCAAGACGATTCCGCTAACTC 486 93 2126 Antisense
GCTAACTCAAGAACTACACTCACCG 93 303 2143 Antisense
ACAATGAAACCACTTCGCTGTTCTC 139 115 2192 Antisense
AAAGCACATTCACGCCTATTTTTTC 566 123 2222 Antisense
TTTTCGTCAACGCGCCTCGAAGAGA 448 667 2242 Antisense
GAGCTCAAGGACAACCATGCCGAAG 163 389 2284 Antisense
GGCCGACGAGAGCCAGCTGAACGAC 257 543 2331 Antisense
CAGTTCAACAATTTTCGACCCGTCG 447 205 2382 Antisense
ACACCAATACGACTGAGAGCCTCAC 377 109 2498 Antisense
AATTCGGCTCCTCAACGATGATGCT 238 175 2604 Antisense
ATTATACCGGTATTTCACAACGCCA 333 13 2700 Antisense
Sequence Source Affymetrix Proprietary Database