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[172535_s_at]

Description W03F9.2B /REP_DB=WormBase Gene ID /WP=CE24030 /TR=Q9TXS2 /GB=AAG24208.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 99      4grp_high_8_8 > 38      6grp_total > 95      4grp_total > 34      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 221
1 2 3 4 range
A 266.8
(-3)
P 		399.4
(3)
P 		333.7
(0)
P 		303.6
(-1.3)
P 		133
B 275.1
(-2)
P 		340.1
(3)
P 		319.7
(1.4)
P 		262.2
(-3)
P 		78
C 205
(-3)
P 		326
(0.3)
P 		239.5
(-2.1)
M 		426.3
(3)
P 		221
avr 249
(-3) 		355.2
(3) 		297.6
(-0.3) 		330.7
(1.6) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 278
1 2 3 4 5 6 range
A 167
(-3)
P 		271.5
(-0.7)
P 		264.5
(-0.9)
P 		247.6
(-1.3)
P 		445.1
(3)
P 		411.4
(2.3)
P 		278
B 183.2
(-3)
P 		188.7
(-2.9)
P 		221.1
(-2)
M 		252.8
(-1.2)
P 		412.1
(3)
P 		352.3
(1.4)
P 		229
C 188.8
(-3)
P 		280.4
(-0.3)
P 		293.1
(0.1)
P 		298.6
(0.2)
P 		353.3
(1.8)
P 		393.5
(3)
P 		205
avr 179.7
(-3) 		246.9
(-1.2) 		259.6
(-0.9) 		266.3
(-0.7) 		403.5
(3) 		385.7
(2.5) 		224
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 97.1
(3)
P 		86.7
(1.8)
P 		87.2
(1.9)
P 		44.4
(-3)
P 		53
B 87.7
(3)
P 		84
(2.3)
P 		74.1
(0.4)
P 		55.9
(-3)
P 		32
C 67.9
(-3)
P 		93.7
(3)
P 		83.5
(0.6)
M 		71.9
(-2.1)
P 		26
avr 84.2
(2.2) 		88.1
(3) 		81.6
(1.7) 		57.4
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 137
1 2 3 4 5 6 range
A 30.8
(-3)
P 		96.5
(0.8)
P 		57.6
(-1.4)
P 		62.8
(-1.1)
P 		134.3
(3)
P 		100.2
(1)
P 		104
B 63.7
(-2.5)
P 		62.8
(-2.5)
P 		53.7
(-3)
M 		67
(-2.3)
P 		167.4
(3)
P 		131.4
(1.1)
P 		114
C 70
(-2.2)
P 		85.6
(-0.9)
P 		74.6
(-1.8)
P 		60
(-3)
P 		114.3
(1.5)
P 		131.7
(3)
P 		72
avr 54.8
(-3) 		81.6
(-1.1) 		62
(-2.5) 		63.3
(-2.4) 		138.7
(3) 		121.1
(1.7) 		84
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172535_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15228
Sequence Type Exemplar sequence
Representative Public ID W03F9.2B NCBI
Target Description W03F9.2B /REP_DB=WormBase Gene ID /WP=CE24030 /TR=Q9TXS2 /GB=AAG24208.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070738(11), NM_070739(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070738 NCBI Caenorhabditis elegans W03F9.2a (W03F9.2) mRNA, complete cds. 11/11 A 
NM_070739 NCBI Caenorhabditis elegans W03F9.2b (W03F9.2) mRNA, complete cds. 11/11 None
SNAP00000001162 ENSEMBL cdna:SNAP chromosome:CEL140:V:124206:127779:-1 11/11 None
GENEFINDER00000001170 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:126917:127779:-1 11/11 None
W03F9.2a ENSEMBL cdna:known chromosome:CEL140:V:126879:127780:-1 gene:W03F9.2 11/11 A 
W03F9.2b ENSEMBL cdna:known chromosome:CEL140:V:126945:127810:-1 gene:W03F9.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:127611-127779(-) 100.0 100.0
Public Domain and Genome References
Ensembl W03F9.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503138 W03F9.1 [Caenorhabditis elegans] gb|AAG24206.1| Hypothetical protein W03F9.1 [Caenorhabditis elegans] sp|O16999|ZPR1_CAEEL Zinc-finger protein ZPR1 homolog 0.0
blast CAE62365 Hypothetical protein CBG06449 [Caenorhabditis briggsae] 0.0
blast NP_503139 W03F9.2a [Caenorhabditis elegans] gb|AAG24200.1| Hypothetical protein W03F9.2a [Caenorhabditis elegans] 1.0E-138
blast NP_503139 W03F9.2a [Caenorhabditis elegans] gb|AAG24200.1| Hypothetical protein W03F9.2a [Caenorhabditis elegans] 1.0E-136
blast CAE62370 Hypothetical protein CBG06454 [Caenorhabditis briggsae] 9.0E-49
blast NP_503140 W03F9.2b [Caenorhabditis elegans] gb|AAG24208.1| Hypothetical protein W03F9.2b [Caenorhabditis elegans] 5.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR004457 EMBL-EBI Zn-finger, ZPR1 type 2.1E-101
Pfam IPR004457 EMBL-EBI Zn-finger, ZPR1 type 2.6E-96
Sequence
Target Sequence 
>C. ELEGANS:172535_S_AT
atgacagagccatctacatcaggagcccaagaccatgacgattatctagtcactct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGACAGAGCCATCTACATCAGGAG 455 45 13 Antisense
GACAGAGCCATCTACATCAGGAGCC 293 369 15 Antisense
ACAGAGCCATCTACATCAGGAGCCC 671 107 16 Antisense
CCATCTACATCAGGAGCCCAAGACC 540 271 22 Antisense
TCTACATCAGGAGCCCAAGACCATG 88 611 25 Antisense
ACATCAGGAGCCCAAGACCATGACG 93 105 28 Antisense
ATCAGGAGCCCAAGACCATGACGAT 579 27 30 Antisense
CAGGAGCCCAAGACCATGACGATTA 332 205 32 Antisense
GGAGCCCAAGACCATGACGATTATC 487 521 34 Antisense
GCCCAAGACCATGACGATTATCTAG 659 285 37 Antisense
ACCATGACGATTATCTAGTCACTCT 198 87 44 Antisense
Sequence Source Affymetrix Proprietary Database