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[172534_x_at]

Description T13A10.1 /REP_DB=WormBase Gene ID /WP=CE07483 /TR=Q22449 /GB=AAB38121.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 08      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 23.3
(-1.4)
A 		14
(-2.7)
A 		11.8
(-3)
A 		54.8
(3)
A 		43
B 7.2
(-3)
A 		17.5
(-1.7)
A 		16.2
(-1.9)
A 		55.1
(3)
A 		48
C 15.1
(-3)
A 		16.8
(-2.9)
A 		68.8
(-0.2)
A 		132.2
(3)
M 		117
avr 15.2
(-3) 		16.1
(-2.9) 		32.3
(-1.4) 		80.7
(3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 29.9
(-1.7)
A 		45.6
(0.3)
A 		26.1
(-2.2)
A 		19.9
(-3)
A 		46.2
(0.3)
A 		67.3
(3)
M 		47
B 23.9
(-2.9)
A 		22.7
(-3)
A 		22.7
(-3)
A 		28.3
(-2.4)
A 		61.7
(1.1)
P 		79.4
(3)
P 		57
C 20.7
(-3)
A 		25.6
(-2.5)
A 		24
(-2.7)
A 		54.2
(0.1)
A 		35.9
(-1.6)
A 		85.6
(3)
P 		65
avr 24.8
(-2.9) 		31.3
(-2.2) 		24.3
(-3) 		34.1
(-1.9) 		47.9
(-0.3) 		77.4
(3) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 8.5
(3)
A 		3
(-3)
A 		3.1
(-2.9)
A 		8
(2.5)
A 		6
B 2.3
(-3)
A 		4.3
(-1.7)
A 		3.7
(-2.1)
A 		11.7
(3)
A 		9
C 5
(-2.9)
A 		4.8
(-3)
A 		24
(3)
A 		22.3
(2.5)
M 		19
avr 5.3
(-2.2) 		4
(-3) 		10.3
(0.8) 		14
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 5.5
(-2.8)
A 		16.2
(2.9)
A 		5.7
(-2.7)
A 		5.1
(-3)
A 		13.9
(1.7)
A 		16.4
(3)
M 		11
B 8.3
(-2.3)
A 		7.5
(-2.5)
A 		5.5
(-3)
A 		7.5
(-2.5)
A 		25.1
(1.9)
P 		29.6
(3)
P 		24
C 7.7
(-2.6)
A 		7.8
(-2.5)
A 		6.1
(-3)
A 		10.9
(-1.7)
A 		11.6
(-1.5)
A 		28.7
(3)
P 		23
avr 7.2
(-2.6) 		10.5
(-1.5) 		5.8
(-3) 		7.8
(-2.4) 		16.9
(0.5) 		24.9
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172534_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11149
Sequence Type Exemplar sequence
Representative Public ID T13A10.1 NCBI
Target Description T13A10.1 /REP_DB=WormBase Gene ID /WP=CE07483 /TR=Q22449 /GB=AAB38121.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068552(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068552 NCBI Caenorhabditis elegans T13A10.1 (T13A10.1) mRNA, complete cds. 11/11 None
SNAP00000039095 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6276378:6276954:1 11/11 None
T13A10.1 ENSEMBL cdna:known chromosome:CEL140:IV:6276378:6276954:1 gene:T13A10.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_068362 2/11 Cross Hyb Matching Probes A 
SNAP00000002642 2/11 Cross Hyb Matching Probes None
GENEFINDER00000002655 2/11 Cross Hyb Matching Probes None
GENEFINDER00000039106 8/11 Cross Hyb Matching Probes None
F36H12.5 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6276383-6276960(+) 70.09 100.0
chrIV:5266860-5267434(+) 89.96 90.38
Public Domain and Genome References
Gene Title
Ensembl T13A10.1
Entrez Gene 188458 Entrez gene
SwissProt Q22449 EMBL-EBI
WormBase CE07483 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500953 T13A10.1 [Caenorhabditis elegans] gb|AAB38121.1| Hypothetical protein T13A10.1 [Caenorhabditis elegans] 2.0E-43
blast AAC26931 Hypothetical protein F36H12.5 [Caenorhabditis elegans] ref|NP_500763.1| F36H12.5 [Caenorhabditis elegans] 5.0E-39
blast CAE65005 Hypothetical protein CBG09843 [Caenorhabditis briggsae] 5.0E-28
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500953.1 1 5-24
T13A10.1 1 5-24
SNAP00000039095 1 5-24
Sequence
Target Sequence 
>C. ELEGANS:172534_X_AT
catttggtttgggcgtatcacattttcgcaattattttaatggcgatgactgtctctgtt
gggtgcaaaccaaaggctaagaaaccaaaagcaactgctccaaaaccgataagctcgatc
tcgtcaaactccaaagtcgcccctccagcccctccaccaccaccaccagaagcggaaaag
aaaccggaaaaggaagaagagccgaagaaggagaagtcgaagatgaaaagtgaagtaaag
gaaccagatgctccaaaaaaagaaaatgataaaacatcagaggataagaaggagaaacag
gaggatacatttgatgctgtcaaaccgaaacaacaggatgctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTTGGTTTGGGCGTATCACATTT 452 211 19 Antisense
GTATCACATTTTCGCAATTATTTTA 576 453 33 Antisense
ATTTTAATGGCGATGACTGTCTCTG 413 13 52 Antisense
GACTGTCTCTGTTGGGTGCAAACCA 100 375 66 Antisense
GTGCAAACCAAAGGCTAAGAAACCA 656 479 81 Antisense
AACTGCTCCAAAACCGATAAGCTCG 321 141 111 Antisense
GATAAGCTCGATCTCGTCAAACTCC 523 421 126 Antisense
CGATCTCGTCAAACTCCAAAGTCGC 17 249 134 Antisense
ACCACCACCACCAGAAGCGGAAAAG 595 85 174 Antisense
AGGAGGATACATTTGATGCTGTCAA 582 55 317 Antisense
GTCAAACCGAAACAACAGGATGCTG 235 461 337 Antisense
Sequence Source Affymetrix Proprietary Database