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[172533_x_at] serine/threonine protein phosphatase

Description Y105C5B.3 /REP_DB=WormBase Gene ID /WP=CE24079 /TR=Q9NAM9 /GB=CAB54350.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 11      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 30.2
(-1)
A 		18.1
(-2.3)
A 		10.9
(-3)
A 		68.7
(3)
A 		58
B 2
(-2.9)
A 		28.6
(0.9)
A 		1.3
(-3)
A 		42.8
(3)
A 		42
C 33.9
(-1.4)
A 		2.9
(-3)
A 		2.9
(-3)
A 		118.4
(3)
P 		116
avr 22
(-1.6) 		16.5
(-2) 		5
(-3) 		76.6
(3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 4.6
(-3)
A 		9.3
(-2.3)
A 		44
(2.7)
A 		46.2
(3)
P 		22.4
(-0.4)
A 		6.9
(-2.7)
A 		42
B 23.2
(0.2)
A 		29.3
(1.3)
A 		36
(2.5)
A 		16.8
(-0.9)
A 		38.8
(3)
A 		5
(-3)
A 		34
C 12
(-2.1)
A 		61.1
(3)
P 		6
(-2.7)
A 		3.2
(-3)
A 		12.7
(-2)
A 		31
(-0.1)
A 		58
avr 13.3
(-3) 		33.2
(3) 		28.7
(1.6) 		22.1
(-0.3) 		24.6
(0.4) 		14.3
(-2.7) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 11
(3)
A 		3.9
(-2.3)
A 		2.9
(-3)
A 		10.1
(2.3)
A 		8
B 0.6
(-2.8)
A 		7.1
(1.6)
A 		0.3
(-3)
A 		9.1
(3)
A 		9
C 11.2
(0.3)
A 		0.8
(-3)
A 		1
(-2.9)
A 		20
(3)
P 		19
avr 7.6
(0.2) 		3.9
(-1.7) 		1.4
(-3) 		13.1
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 0.8
(-3)
A 		3.3
(-1.6)
A 		9.6
(1.8)
A 		11.7
(3)
P 		6.8
(0.3)
A 		1.7
(-2.5)
A 		11
B 8.1
(-0.3)
A 		9.8
(0.4)
A 		8.7
(-0.1)
A 		4.5
(-1.9)
A 		15.8
(3)
A 		1.9
(-3)
A 		14
C 4.5
(-1.7)
A 		18.6
(3)
P 		1.5
(-2.7)
A 		0.6
(-3)
A 		4.1
(-1.8)
A 		10.4
(0.3)
A 		18
avr 4.5
(-3) 		10.6
(3) 		6.6
(-0.9) 		5.6
(-1.9) 		8.9
(1.3) 		4.7
(-2.8) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172533_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9467
Sequence Type Exemplar sequence
Representative Public ID Y105C5B.3 NCBI
Target Description Y105C5B.3 /REP_DB=WormBase Gene ID /WP=CE24079 /TR=Q9NAM9 /GB=CAB54350.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070491(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070491 NCBI Caenorhabditis elegans Y105C5B.3 (Y105C5B.3) mRNA, complete cds. 11/11 None
SNAP00000018387 ENSEMBL cdna:SNAP chromosome:CEL140:IV:15884184:15888381:1 11/11 None
GENEFINDER00000018439 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15884184:15888744:1 11/11 None
Y105C5B.3 ENSEMBL cdna:known chromosome:CEL140:IV:15884184:15888744:1 gene:Y105C5B.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_070495 5/11 Cross Hyb Matching Probes A 
SNAP00000018389 5/11 Cross Hyb Matching Probes None
GENEFINDER00000018423 5/11 Cross Hyb Matching Probes None
Y105C5B.7 5/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15884189-15888750(+) 100.0 100.0
Public Domain and Genome References
Gene Title serine/threonine protein phosphatase
Ensembl Y105C5B.3
Entrez Gene 190886 Entrez gene
SwissProt Q9NAM9 EMBL-EBI
WormBase CE33471 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:252006_AT purple acid phosphatase (PAP22) at
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB54350 Hypothetical protein Y105C5B.3 [Caenorhabditis elegans] ref|NP_502892.2| Y105C5B.3 [Caenorhabditis elegans] 0.0
blast CAE57394 Hypothetical protein CBG00344 [Caenorhabditis briggsae] 0.0
blast CAB60314 Hypothetical protein Y105C5B.7 [Caenorhabditis elegans] ref|NP_502896.1| Y105C5B.7 [Caenorhabditis elegans] 0.0
blast CAE57394 Hypothetical protein CBG00344 [Caenorhabditis briggsae] 1.0E-177
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.2E-22
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 3.3E-19
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 7.0E-4
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 2.7E-12
Sequence
Target Sequence 
>C. ELEGANS:172533_X_AT
aaatgtcaaatgaagccaaagctcaatatcaatggctccgcgaggatcttgcacaaaata
cgaaaaaatggacaattgtaatgttccatagaccatggtattgttcaagtaaaaagaaga
aaggatgtaatgatgatcaggatattctatcaagagaaggtgataagaagaagtttccag
gattagaggaattattgaatcagtataaagttgatatggtattatatggacataagcata
cttacgagagaatgtggccaatttataataagaatccattcaaatcagcaaatcctggac
atattaagaatgcacctgcaccggtttatattttgacgggaggagcgggttgccattccc
acgaggacccatctgatcacataatgcaagatttttctgtgaaagcacttggagaatatg
gatatacttatcttactgtatacaattcaacacatatttcaactgattatgtggatactt
ctagtacgactggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATGTCAAATGAAGCCAAAGCTCA 162 119 815 Antisense
AAAGCTCAATATCAATGGCTCCGCG 158 125 832 Antisense
TCAATGGCTCCGCGAGGATCTTGCA 219 633 843 Antisense
GACAATTGTAATGTTCCATAGACCA 198 365 885 Antisense
ATAGACCATGGTATTGTTCAAGTAA 219 23 902 Antisense
GAATCCATTCAAATCAGCAAATCCT 195 331 1086 Antisense
AAATCAGCAAATCCTGGACATATTA 150 117 1096 Antisense
GAATGCACCTGCACCGGTTTATATT 700 327 1122 Antisense
TGACGGGAGGAGCGGGTTGCCATTC 239 569 1148 Antisense
GAGGACCCATCTGATCACATAATGC 651 403 1177 Antisense
GTGGATACTTCTAGTACGACTGGAA 75 491 1285 Antisense
Sequence Source Affymetrix Proprietary Database