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[172532_x_at]

Description ZC239.13 /REP_DB=WormBase Gene ID /WP=CE15134 /TR=P91562 /GB=AAB37954.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 72      4grp_total > 04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 183
1 2 3 4 range
A 42.6
(-1.7)
A 		5.3
(-3)
A 		7.1
(-2.9)
A 		172.8
(3)
P 		168
B 40.4
(-1.8)
A 		9
(-3)
A 		12.1
(-2.9)
A 		167.5
(3)
P 		159
C 28.5
(-2.2)
A 		2.8
(-3)
A 		21.5
(-2.4)
A 		185.6
(3)
P 		183
avr 37.2
(-1.9) 		5.7
(-3) 		13.6
(-2.7) 		175.3
(3) 		170

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 21.5
(-2.1)
A 		7.4
(-3)
A 		104.4
(3)
A 		52.5
(-0.2)
A 		83.8
(1.7)
P 		9.3
(-2.9)
A 		97
B 2.5
(-3)
A 		7.2
(-2.7)
A 		67.1
(1.5)
A 		88.8
(3)
A 		39.3
(-0.4)
P 		21.9
(-1.7)
A 		86
C 12.6
(-3)
A 		31.4
(3)
A 		29.4
(2.4)
A 		29.1
(2.3)
A 		25.8
(1.2)
A 		16.6
(-1.7)
A 		19
avr 12.2
(-3) 		15.3
(-2.7) 		67
(3) 		56.8
(1.9) 		49.6
(1.1) 		15.9
(-2.6) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 15.5
(0.6)
A 		1.2
(-3)
A 		1.9
(-2.8)
A 		25.3
(3)
P 		24
B 12.9
(-1.1)
A 		2.2
(-3)
A 		2.8
(-2.9)
A 		35.7
(3)
P 		34
C 9.4
(-1.3)
A 		0.8
(-3)
A 		7.5
(-1.7)
A 		31.3
(3)
P 		31
avr 12.6
(-0.7) 		1.4
(-3) 		4.1
(-2.4) 		30.8
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 4
(-2.6)
A 		2.6
(-2.9)
A 		22.7
(2.3)
A 		13.3
(-0.1)
A 		25.3
(3)
P 		2.3
(-3)
A 		23
B 0.9
(-3)
A 		2.4
(-2.6)
A 		16.3
(1.1)
A 		23.5
(3)
A 		16
(1)
P 		8.2
(-1.1)
A 		23
C 4.7
(-3)
A 		9.6
(3)
A 		7.5
(0.4)
A 		5.8
(-1.7)
A 		8.3
(1.4)
A 		5.6
(-1.9)
A 		5
avr 3.2
(-3) 		4.9
(-2.2) 		15.5
(2.5) 		14.2
(2) 		16.5
(3) 		5.4
(-2) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172532_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5749
Sequence Type Exemplar sequence
Representative Public ID ZC239.13 NCBI
Target Description ZC239.13 /REP_DB=WormBase Gene ID /WP=CE15134 /TR=P91562 /GB=AAB37954.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062079(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062079 NCBI Caenorhabditis elegans ZC239.13 (ZC239.13) mRNA, complete cds. 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_062081 1/11 Cross Hyb Matching Probes A 
SNAP00000024298 1/11 Cross Hyb Matching Probes None
GENEFINDER00000024304 1/11 Cross Hyb Matching Probes None
GENEFINDER00000024308 1/11 Cross Hyb Matching Probes None
ZC239.13 4/11 Cross Hyb Matching Probes None
ZC239.16 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3222503-3222808(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Entrez Gene 173664 Entrez gene
SwissProt P91562 EMBL-EBI
WormBase CE33490 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37954 Hypothetical protein ZC239.13 [Caenorhabditis elegans] ref|NP_494480.2| ZC239.13 [Caenorhabditis elegans] 9.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 3.6E-9
Sequence
Target Sequence 
>C. ELEGANS:172532_X_AT
gaaactgttaaactagacgttggcggaactattttcaaaacttcaaaagatacattaatg
aaactcgatagcatttttaaaactatgctggaatctggaacagggctggaacttgacgaa
tccggatgcatttttatcgatcgctccccgaaacattttaacaggattttaaatttcatg
agagatggtgacctgtcacttcccgaaaattgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACTGTTAAACTAGACGTTGGCG 436 351 19 Antisense
TAGACGTTGGCGGAACTATTTTCAA 478 651 32 Antisense
GAAACTCGATAGCATTTTTAAAACT 632 355 78 Antisense
TTTTTAAAACTATGCTGGAATCTGG 297 445 92 Antisense
GCTGGAATCTGGAACAGGGCTGGAA 105 295 105 Antisense
GAACAGGGCTGGAACTTGACGAATC 446 347 116 Antisense
GAACTTGACGAATCCGGATGCATTT 685 349 127 Antisense
GGATGCATTTTTATCGATCGCTCCC 546 513 142 Antisense
GATCGCTCCCCGAAACATTTTAACA 24 417 157 Antisense
GAGAGATGGTGACCTGTCACTTCCC 24 395 198 Antisense
GACCTGTCACTTCCCGAAAATTGGA 376 377 208 Antisense
Sequence Source Affymetrix Proprietary Database