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[172531_x_at]

Description Y46H3C.5 /REP_DB=WormBase Gene ID /WP=CE24316 /TR=Q9N4W2 /GB=AAF60627.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 57      4grp_total > 31      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 68.6
(3)
P 		5
(-3)
A 		36.2
(-0.1)
A 		35.4
(-0.1)
A 		64
B 86.5
(3)
P 		34.5
(-3)
A 		49.3
(-1.3)
A 		61.2
(0.1)
A 		52
C 72.9
(3)
P 		51.3
(0.3)
A 		25.3
(-3)
A 		63.7
(1.8)
P 		48
avr 76
(3) 		30.3
(-3) 		36.9
(-2.1) 		53.4
(0) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 10.4
(-3)
A 		40.5
(-0.4)
P 		27.7
(-1.5)
A 		19.9
(-2.2)
A 		37.5
(-0.7)
A 		80.6
(3)
P 		70
B 70.7
(0.2)
P 		53.9
(-1)
P 		41.8
(-1.8)
P 		36.5
(-2.2)
A 		24.8
(-3)
A 		110.5
(3)
P 		86
C 70.9
(3)
P 		30.6
(-0.5)
P 		1.1
(-3)
A 		44.3
(0.7)
P 		23.2
(-1.1)
A 		60.5
(2.1)
P 		70
avr 50.7
(-0.3) 		41.7
(-1.2) 		23.5
(-3) 		33.6
(-2) 		28.5
(-2.5) 		83.9
(3) 		60
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 25
(3)
P 		1.1
(-3)
A 		9.5
(-0.9)
A 		5.2
(-2)
A 		24
B 27.6
(3)
P 		8.5
(-3)
A 		11.4
(-2.1)
A 		13
(-1.6)
A 		19
C 24.1
(3)
P 		14.7
(-0.7)
A 		8.8
(-3)
A 		10.7
(-2.3)
P 		15
avr 25.6
(3) 		8.1
(-3) 		9.9
(-2.4) 		9.6
(-2.5) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 1.9
(-3)
A 		14.4
(1.2)
P 		6
(-1.6)
A 		5
(-1.9)
A 		11.3
(0.2)
A 		19.6
(3)
P 		18
B 24.6
(-0.2)
P 		18
(-1.4)
P 		10.2
(-2.9)
P 		9.7
(-3)
A 		10.1
(-2.9)
A 		41.2
(3)
P 		32
C 26.3
(3)
P 		9.3
(-0.9)
P 		0.3
(-3)
A 		8.9
(-1)
P 		7.5
(-1.3)
A 		20.3
(1.6)
P 		26
avr 17.6
(0.4) 		13.9
(-0.7) 		5.5
(-3) 		7.9
(-2.3) 		9.6
(-1.9) 		27
(3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172531_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15153
Sequence Type Exemplar sequence
Representative Public ID Y46H3C.5 NCBI
Target Description Y46H3C.5 /REP_DB=WormBase Gene ID /WP=CE24316 /TR=Q9N4W2 /GB=AAF60627.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071083(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071083 NCBI Caenorhabditis elegans Y46H3C.5 (Y46H3C.5) mRNA, complete cds. 11/11 None
SNAP00000038919 ENSEMBL cdna:SNAP chromosome:CEL140:V:1690858:1691564:-1 11/11 None
GENEFINDER00000038932 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1690718:1691564:-1 11/11 None
Y46H3C.5 ENSEMBL cdna:known chromosome:CEL140:V:1690858:1691564:-1 gene:Y46H3C.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001029781 2/11 Cross Hyb Matching Probes None
GENEFINDER00000016111 2/11 Cross Hyb Matching Probes None
SNAP00000016075 2/11 Cross Hyb Matching Probes None
GENEFINDER00000015572 2/11 Cross Hyb Matching Probes None
SNAP00000015564 4/11 Cross Hyb Matching Probes None
Y49E10.26 2/11 Cross Hyb Matching Probes A 
Y13C8A.2 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1690857-1691564(-) 72.83 100.0
Public Domain and Genome References
Gene Title
Ensembl Y46H3C.5
Entrez Gene 178653 Entrez gene
SwissProt Q9N4W2 EMBL-EBI
WormBase CE24316 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60627 Hypothetical protein Y46H3C.5 [Caenorhabditis elegans] ref|NP_503484.1| Y46H3C.5 [Caenorhabditis elegans] 5.0E-71
blast AAF60627 Hypothetical protein Y46H3C.5 [Caenorhabditis elegans] ref|NP_503484.1| Y46H3C.5 [Caenorhabditis elegans] 8.0E-66
blast AAR85898 Hypothetical protein Y13C8A.2 [Caenorhabditis elegans] ref|NP_001024952.1| Y13C8A.2 [Caenorhabditis elegans] 3.0E-11
blast AAD12846 Hypothetical protein Y9D1A.2 [Caenorhabditis elegans] ref|NP_495559.1| Y9D1A.2 [Caenorhabditis elegans] 2.0E-10
Sequence
Target Sequence 
>C. ELEGANS:172531_X_AT
ggaatggatcagcaacgacgacgacgacgacgaggacaacaaaagaccgaaaggatcgac
gatcaagtcgacgaaggaggatcgtgccggaaggatcgggacgagaggacgatggaaaga
gggaatccggaaacacagaaaatgatctacaataaaagcgataacaacgaacaggatgaa
tggatcggaatggatcgaaatggatcagcaacgacgtcgacgacgaggacaacaaaagac
cgaaaggatcgacgatcaagtcgacgaaggatgccgaatggatcgggaccagacgacgat
ggtaagatgatgaattccggaaacacgaaaataatttacgataaaagcggtgacgacgac
gaacagggtggatggatcggaatggatcggaatggatcagaatggttggatcgggagaag
gcgagaaccacggcaacgacgacgacgacgaggaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAATGGATCAGCAACGACGACGAC 652 531 40 Antisense
GACGACGACGACGACGAGGACAACA 434 379 56 Antisense
GGATCGTGCCGGAAGGATCGGGACG 31 483 118 Antisense
GAGGGAATCCGGAAACACAGAAAAT 540 399 158 Antisense
GAAATGGATCAGCAACGACGTCGAC 335 361 236 Antisense
CAAGTCGACGAAGGATGCCGAATGG 655 183 296 Antisense
GATGCCGAATGGATCGGGACCAGAC 148 413 309 Antisense
GTAAGATGATGAATTCCGGAAACAC 188 463 341 Antisense
AGCGGTGACGACGACGAACAGGGTG 212 73 385 Antisense
AGAAGGCGAGAACCACGGCAACGAC 10 75 455 Antisense
GGCAACGACGACGACGACGAGGACA 707 533 471 Antisense
Sequence Source Affymetrix Proprietary Database