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[172530_x_at] 7TM chemoreceptor, srw family

Description H27D07.2 /REP_DB=WormBase Gene ID /WP=CE17981 /TR=O61908 /GB=AAG24154.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 10      6grp_cgc > 90      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 236
1 2 3 4 range
A 16.5
(-2.7)
A 		49.4
(-1.3)
A 		8.5
(-3)
A 		156.2
(3)
M 		148
B 31.1
(-3)
A 		79
(0.4)
A 		38
(-2.5)
A 		115.9
(3)
A 		85
C 68.5
(-2.3)
A 		52.9
(-2.8)
A 		46.6
(-3)
A 		244
(3)
P 		197
avr 38.7
(-2.7) 		60.4
(-1.7) 		31
(-3) 		172
(3) 		141

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 39.7
(-1.2)
A 		29.2
(-3)
A 		64.5
(3)
A 		45.2
(-0.3)
A 		52.3
(0.9)
A 		34.9
(-2)
A 		35
B 22.8
(-2.3)
A 		25.9
(-1.9)
A 		62.1
(3)
A 		17.6
(-3)
A 		45.2
(0.7)
A 		30.1
(-1.3)
A 		45
C 42.4
(-0.6)
A 		78.3
(3)
P 		22.2
(-2.7)
A 		36.3
(-1.2)
A 		39.8
(-0.9)
A 		18.9
(-3)
A 		59
avr 35
(-1.1) 		44.5
(1.6) 		49.6
(3) 		33
(-1.6) 		45.8
(1.9) 		28
(-3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 6
(-1.9)
A 		10.7
(-0.5)
A 		2.2
(-3)
A 		22.9
(3)
M 		21
B 9.9
(-2.6)
A 		19.5
(1)
A 		8.8
(-3)
A 		24.7
(3)
A 		16
C 22.7
(-1.3)
A 		15.2
(-3)
A 		16.2
(-2.8)
A 		41.1
(3)
P 		26
avr 12.9
(-1.9) 		15.1
(-1.2) 		9.1
(-3) 		29.6
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 7.3
(-3)
A 		10.4
(-0.8)
A 		14
(1.7)
A 		11.5
(-0)
A 		15.8
(3)
A 		8.5
(-2.2)
A 		9
B 7.9
(-1.6)
A 		8.6
(-1.3)
A 		15.1
(1.6)
A 		4.7
(-3)
A 		18.4
(3)
A 		11.2
(-0.2)
A 		14
C 15.7
(0.3)
A 		23.9
(3)
P 		5.6
(-3)
A 		7.3
(-2.4)
A 		12.9
(-0.6)
A 		6.3
(-2.8)
A 		18
avr 10.3
(-1.1) 		14.3
(1.9) 		11.6
(-0.1) 		7.8
(-3) 		15.7
(3) 		8.7
(-2.3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172530_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15616
Sequence Type Exemplar sequence
Representative Public ID H27D07.2 NCBI
Target Description H27D07.2 /REP_DB=WormBase Gene ID /WP=CE17981 /TR=O61908 /GB=AAG24154.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071396(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071396 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-141) (srw-141) mRNA, complete cds. 11/11 None
GENEFINDER00000017836 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2937142:2941332:-1 11/11 None
H27D07.2 ENSEMBL cdna:known chromosome:CEL140:V:2937138:2938424:-1 gene:H27D07.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071403 1/11 Cross Hyb Matching Probes A 
H05B21.3 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2937137-2938424(-) 100.0 100.0
chrV:2956842-2958129(-) 95.21 95.76
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-141
Ensembl H27D07.2
Entrez Gene 186787 Entrez gene
SwissProt O61908 EMBL-EBI
WormBase CE17981 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24154 Serpentine receptor, class w protein 141 [Caenorhabditis elegans] ref|NP_503797.1| Serpentine Receptor, class W family member (srw-141) [Caenorhabditis elegans] 0.0
blast AAC17762 Serpentine receptor, class w protein 142 [Caenorhabditis elegans] ref|NP_503804.2| Serpentine Receptor, class W family member (srw-142) [Caenorhabditis elegans] 1.0E-177
blast AAG24154 Serpentine receptor, class w protein 141 [Caenorhabditis elegans] ref|NP_503797.1| Serpentine Receptor, class W family member (srw-141) [Caenorhabditis elegans] 1.0E-171
blast AAG24155 Serpentine receptor, class w protein 143 [Caenorhabditis elegans] ref|NP_503798.2| Serpentine Receptor, class W family member (srw-143) [Caenorhabditis elegans] 1.0E-166
blast AAC17762 Serpentine receptor, class w protein 142 [Caenorhabditis elegans] ref|NP_503804.2| Serpentine Receptor, class W family member (srw-142) [Caenorhabditis elegans] 1.0E-158
blast AAG24155 Serpentine receptor, class w protein 143 [Caenorhabditis elegans] ref|NP_503798.2| Serpentine Receptor, class W family member (srw-143) [Caenorhabditis elegans] 1.0E-115
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503797.1 5 37-59,158-180,222-244,273-295,310-332
H27D07.2 5 37-59,158-180,222-244,273-295,310-332
GENEFINDER00000017836 10 36-58,68-85,160-182,222-244,273-295,310-332,432-454,496-518,547-569,584-606
Sequence
Target Sequence 
>C. ELEGANS:172530_X_AT
gcctacctcattttttgcaatcattggtatatctttacttttcttcccaatttcaataag
cacattcttggaatatgatattttctcggaaaaatacaaatcagcatgcaatccaaaagg
agtattatctttttatctttacatatccaaattatttgaaagaaataatggagttatttt
aaaatatgttactttaggtaatgcaatggtgtcaaatataattccatgttttcttttccc
tgttgtgacgtttttattagtgaaagaattatggaagaacgaaaataatcgatggcgatt
attatcttcaaaaaaagtgaacgactctataaagagcactcagctggttttattattaac
gtgcatgtttttcatcgcccaatttcccattggaattgccagcggtgtttcttatttctt
cgataaaaatcccggaatcacaaagatatttcacgaaatcatgtttctcttttctataat
gcttgttctcaataccatctctcattttttcatatgcattttcatatcgtcacaatatcg
cgcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCTACCTCATTTTTTGCAATCATT 428 281 483 Antisense
TGGTATATCTTTACTTTTCTTCCCA 667 551 507 Antisense
TATCTTTTTATCTTTACATATCCAA 580 659 608 Antisense
ATAATTCCATGTTTTCTTTTCCCTG 580 25 700 Antisense
ATTAACGTGCATGTTTTTCATCGCC 665 11 837 Antisense
TTTCATCGCCCAATTTCCCATTGGA 48 673 852 Antisense
ATTGCCAGCGGTGTTTCTTATTTCT 571 7 877 Antisense
GTTTCTCTTTTCTATAATGCTTGTT 142 451 945 Antisense
AATGCTTGTTCTCAATACCATCTCT 11 167 960 Antisense
AATACCATCTCTCATTTTTTCATAT 66 173 973 Antisense
TCATATCGTCACAATATCGCGCGGA 235 619 1004 Antisense
Sequence Source Affymetrix Proprietary Database