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[172529_x_at]

Description K08D10.6 /REP_DB=WormBase Gene ID /WP=CE07358 /TR=Q21320 /GB=AAA98030.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 11      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 300
1 2 3 4 range
A 45.6
(-2.8)
A 		60.9
(-2.2)
A 		40.6
(-3)
A 		192
(3)
M 		151
B 47.5
(1.4)
A 		34
(-0.3)
A 		13.1
(-3)
A 		60
(3)
A 		47
C 74.4
(-1.6)
A 		46.5
(-2.2)
A 		4.7
(-3)
A 		305.1
(3)
P 		300
avr 55.8
(-1.7) 		47.1
(-2) 		19.5
(-3) 		185.7
(3) 		166

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 23.7
(0.9)
A 		2.6
(-2.9)
A 		26.7
(1.4)
A 		12.2
(-1.2)
A 		35.4
(3)
A 		2.2
(-3)
A 		33
B 16.1
(-3)
A 		36.7
(2.6)
A 		28
(0.2)
A 		38.3
(3)
A 		30.1
(0.8)
A 		37.6
(2.8)
A 		22
C 39.5
(-1.2)
A 		109.6
(3)
A 		14
(-2.7)
A 		9
(-3)
A 		42.7
(-1)
A 		50.2
(-0.5)
A 		101
avr 26.4
(-1.7) 		49.6
(3) 		22.9
(-2.4) 		19.8
(-3) 		36.1
(0.3) 		30
(-0.9) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 16.6
(-0.9)
A 		13.2
(-2.1)
A 		10.6
(-3)
A 		28.1
(3)
M 		18
B 15.2
(3)
A 		8.4
(-0.3)
A 		3
(-3)
A 		12.8
(1.8)
A 		12
C 24.6
(-0.2)
A 		13.4
(-1.6)
A 		1.6
(-3)
A 		51.5
(3)
P 		50
avr 18.8
(0.2) 		11.7
(-1.5) 		5.1
(-3) 		30.8
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 4.4
(-0.7)
A 		0.9
(-2.8)
A 		5.8
(0.1)
A 		3.1
(-1.5)
A 		10.7
(3)
A 		0.5
(-3)
A 		10
B 5.6
(-3)
A 		12.2
(1.7)
A 		6.8
(-2.1)
A 		10.1
(0.2)
A 		12.2
(1.7)
A 		14
(3)
A 		8
C 14.6
(-0.6)
A 		33.4
(3)
A 		3.6
(-2.7)
A 		1.8
(-3)
A 		13.8
(-0.7)
A 		16.8
(-0.2)
A 		32
avr 8.2
(-1.2) 		15.5
(3) 		5.4
(-2.8) 		5
(-3) 		12.2
(1.1) 		10.4
(0.1) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172529_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10786
Sequence Type Exemplar sequence
Representative Public ID K08D10.6 NCBI
Target Description K08D10.6 /REP_DB=WormBase Gene ID /WP=CE07358 /TR=Q21320 /GB=AAA98030.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000009683 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4166534:4169884:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032176 2/11 Cross Hyb Matching Probes None
SNAP00000013614 2/11 Cross Hyb Matching Probes None
GENEFINDER00000009383 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4166539-4167478(+) 28.12 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA98031 Hypothetical protein K08D10.5 [Caenorhabditis elegans] ref|NP_500503.1| K08D10.5 [Caenorhabditis elegans] 0.0
blast CAA86856 Hypothetical protein R03D7.2 [Caenorhabditis elegans] ref|NP_496354.1| R03D7.2 [Caenorhabditis elegans] 1.0E-136
blast CAE56861 Hypothetical protein CBG24691 [Caenorhabditis briggsae] 5.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR005552 EMBL-EBI Scramblase 7.9E-62
Sequence
Target Sequence 
>C. ELEGANS:172529_X_AT
gtcgagtgtcgcgtcgagtgtcgcgtcgagtgtcgcgtcgagtgtcgcgtcgcgtgtcgc
gttgcgtgtcgcgtcgagtgtcgcgtcgcgtgtcgcgttgcatgtcgcgttgcgtgtcgc
gttgcgtgtcgcgtcgcgtgtcgcgttgcgtgtcgcgttgcgtgtcgcgttgcgtgtcgc
gttgcgtgtcgcgatgcgtgtcgcgttgcgtgtcgcgttgcgtgtcgcgttgcgtgtcgc
gttgcgtgtcgcgttgcgtgtcgcgttgcgtgtcgcgttgcgtgtcgcgttgcgtgtcgc
gttgcgtgtcgcgttgcgtgtcgcgttgcgtgtcgcgttgcgtgtcgcggtgcgtctcgc
gttgcgtgtcgcgttgtgtgtcgcgttgcgtgtcgcgttgcgtatcgcgttgcgtatcgc
gttgcgtgtcgcgttgcgtgtcgcgtcgcggttctttgatgtggagtacaggtttttccc
cacctgcagtccgtggcgattgtcgatggagcgcaaaaatcgctgcgaggaagaagcccg
tgtactatcattgcata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGAGTGTCGCGTCGAGTGTCGCG 480 473 345 Antisense
CGAGTGTCGCGTCGAGTGTCGCGTC 154 249 371 Antisense
TCGCGTTGCATGTCGCGTTGCGTGT 2 601 437 Antisense
TCGCGATGCGTGTCGCGTTGCGTGT 682 585 533 Antisense
TTGCGTGTCGCGTTGTGTGTCGCGT 685 701 706 Antisense
TTGCGTGTCGCGTTGCGTATCGCGT 684 701 730 Antisense
TTGCGTATCGCGTTGCGTGTCGCGT 683 701 754 Antisense
GTCGCGGTTCTTTGATGTGGAGTAC 250 475 789 Antisense
GCAGTCCGTGGCGATTGTCGATGGA 670 311 830 Antisense
AAATCGCTGCGAGGAAGAAGCCCGT 358 119 861 Antisense
GAAGCCCGTGTACTATCATTGCATA 1 345 877 Antisense
Sequence Source Affymetrix Proprietary Database