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[172528_x_at]

Description R01B10.2 /REP_DB=WormBase Gene ID /WP=CE18089 /TR=O61972 /GB=AAC17766.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 22.6
(-2.6)
A 		19.4
(-3)
A 		29.6
(-1.6)
A 		63.8
(3)
A 		44
B 18.8
(0.1)
A 		18.6
(0)
A 		13
(-3)
A 		24.1
(3)
A 		11
C 15.6
(-2.5)
A 		14.7
(-2.8)
A 		14.2
(-3)
A 		32.1
(3)
A 		18
avr 19
(-2.6) 		17.6
(-3) 		18.9
(-2.7) 		40
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 3.5
(-3)
A 		17.2
(0.4)
A 		6.3
(-2.3)
A 		8.9
(-1.7)
A 		15.8
(0)
A 		27.8
(3)
P 		24
B 6.8
(-3)
A 		9
(-2.1)
A 		11
(-1.2)
A 		15.5
(0.7)
A 		15.7
(0.8)
A 		20.8
(3)
A 		14
C 19.7
(-0.2)
A 		30.1
(3)
A 		15.2
(-1.6)
A 		10.8
(-3)
A 		27.1
(2.1)
P 		20
(-0.1)
A 		19
avr 10
(-3) 		18.8
(1.1) 		10.8
(-2.6) 		11.7
(-2.2) 		19.5
(1.4) 		22.9
(3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 8.2
(1.7)
A 		4.2
(-3)
A 		7.7
(1.1)
A 		9.3
(3)
A 		5
B 6
(3)
A 		4.6
(0.2)
A 		3
(-3)
A 		5.1
(1.2)
A 		3
C 5.2
(2)
A 		4.2
(-3)
A 		5
(1)
A 		5.4
(3)
A 		1
avr 6.5
(2.7) 		4.3
(-3) 		5.2
(-0.7) 		6.6
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.6
(-3)
A 		6.1
(2.3)
A 		1.4
(-2.2)
A 		2.3
(-1.4)
A 		4.8
(1.1)
A 		6.8
(3)
P 		6
B 2.4
(-3)
A 		3
(-2.3)
A 		2.7
(-2.7)
A 		4.1
(-1.1)
A 		6.4
(1.5)
A 		7.7
(3)
A 		5
C 7.3
(1.4)
A 		9.2
(3)
A 		3.9
(-1.5)
A 		2.2
(-3)
A 		8.8
(2.7)
P 		6.7
(0.9)
A 		7
avr 3.4
(-2) 		6.1
(1.6) 		2.7
(-3) 		2.9
(-2.7) 		6.7
(2.5) 		7.1
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172528_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12110
Sequence Type Exemplar sequence
Representative Public ID R01B10.2 NCBI
Target Description R01B10.2 /REP_DB=WormBase Gene ID /WP=CE18089 /TR=O61972 /GB=AAC17766.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072163(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072163 NCBI Caenorhabditis elegans R01B10.2 (R01B10.2) mRNA, complete cds. 11/11 None
R01B10.2 ENSEMBL cdna:known chromosome:CEL140:V:6043790:6045779:-1 gene:R01B10.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013411 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6043789-6045779(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R01B10.2
Entrez Gene 187503 Entrez gene
SwissProt O61972 EMBL-EBI
WormBase CE18089 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17766 Hypothetical protein R01B10.2 [Caenorhabditis elegans] ref|NP_504564.1| R01B10.2 [Caenorhabditis elegans] 4.0E-32
blast AAF60627 Hypothetical protein Y46H3C.5 [Caenorhabditis elegans] ref|NP_503484.1| Y46H3C.5 [Caenorhabditis elegans] 2.0E-10
Sequence
Target Sequence 
>C. ELEGANS:172528_X_AT
agaatgagggtccgctcggcatgttgcgggatatcgacgatcaagtcgacgaaggaggat
cgtgccgggaagatcgggaccagacgacgatggaaagagggagtccggaaacacggaaaa
tgatctacgatgaaaacgacgacgtaggatcaggcccaaagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAATGAGGGTCCGCTCGGCATGTT 566 73 17 Antisense
GTCCGCTCGGCATGTTGCGGGATAT 54 477 26 Antisense
GGCATGTTGCGGGATATCGACGATC 155 537 34 Antisense
GTTGCGGGATATCGACGATCAAGTC 132 441 39 Antisense
GTCGACGAAGGAGGATCGTGCCGGG 391 473 61 Antisense
GATCGTGCCGGGAAGATCGGGACCA 409 417 74 Antisense
GTGCCGGGAAGATCGGGACCAGACG 696 473 78 Antisense
GATCGGGACCAGACGACGATGGAAA 678 417 88 Antisense
AAACACGGAAAATGATCTACGATGA 497 129 125 Antisense
AAACGACGACGTAGGATCAGGCCCA 705 123 150 Antisense
GACGACGTAGGATCAGGCCCAAAGG 33 379 154 Antisense
Sequence Source Affymetrix Proprietary Database