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[172527_x_at]

Description C24D10.8 /REP_DB=WormBase Gene ID /WP=CE16879 /TR=O46340 /GB=AAB88312.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 10      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 165
1 2 3 4 range
A 18.2
(-2.8)
A 		11.5
(-3)
A 		14.1
(-2.9)
A 		176.3
(3)
P 		165
B 37
(-1)
A 		50.9
(2.1)
A 		27.7
(-3)
A 		55.2
(3)
A 		28
C 46.9
(-2.2)
A 		55.5
(-1.4)
A 		38.1
(-3)
A 		104.1
(3)
P 		66
avr 34
(-2.5) 		39.3
(-2.1) 		26.6
(-3) 		111.9
(3) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2414
1 2 3 4 5 6 range
A 18.1
(-3)
A 		6
(-3)
A 		59.2
(-2.9)
A 		206.7
(-2.5)
P 		1169.1
(-0.1)
P 		2419.5
(3)
P 		2414
B 38.8
(-2.9)
A 		19.6
(-3)
A 		53.3
(-2.9)
A 		172.4
(-2.5)
P 		1366
(1.7)
P 		1746
(3)
P 		1726
C 41.4
(-3)
A 		92.9
(-2.8)
A 		54.4
(-3)
A 		167.1
(-2.6)
P 		1586.8
(2.1)
P 		1863.1
(3)
P 		1822
avr 32.8
(-3) 		39.5
(-3) 		55.6
(-2.9) 		182.1
(-2.5) 		1374
(1.1) 		2009.5
(3) 		1977
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 6.6
(-1.9)
A 		2.5
(-3)
A 		3.7
(-2.7)
A 		25.8
(3)
P 		23
B 11.8
(2.2)
A 		12.6
(3)
A 		6.4
(-3)
A 		11.8
(2.2)
A 		6
C 15.5
(0.1)
A 		15.9
(0.7)
A 		13.3
(-3)
A 		17.5
(3)
P 		4
avr 11.3
(-1) 		10.3
(-1.6) 		7.8
(-3) 		18.4
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 649
1 2 3 4 5 6 range
A 3.3
(-3)
A 		2.1
(-3)
A 		12.9
(-2.9)
A 		52.4
(-2.5)
P 		352.8
(0.6)
P 		589.1
(3)
P 		587
B 13.5
(-2.9)
A 		6.5
(-3)
A 		12.9
(-2.9)
A 		45.7
(-2.6)
P 		555
(2.1)
P 		651.1
(3)
P 		645
C 15.3
(-3)
A 		28.4
(-2.9)
A 		13.8
(-3)
A 		33.6
(-2.8)
P 		513.5
(1.9)
P 		623.7
(3)
P 		610
avr 10.7
(-3) 		12.3
(-3) 		13.2
(-3) 		43.9
(-2.7) 		473.8
(1.6) 		621.3
(3) 		611
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172527_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10962
Sequence Type Exemplar sequence
Representative Public ID C24D10.8 NCBI
Target Description C24D10.8 /REP_DB=WormBase Gene ID /WP=CE16879 /TR=O46340 /GB=AAB88312.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068329(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068329 NCBI Caenorhabditis elegans C24D10.7 (C24D10.7) mRNA, complete cds. 9/11 A 
SNAP00000024206 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5162816:5163031:-1 9/11 None
SNAP00000024208 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5165501:5165716:-1 11/11 None
GENEFINDER00000024211 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5162816:5163031:-1 9/11 None
GENEFINDER00000024214 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5165501:5165788:-1 11/11 None
C24D10.7 ENSEMBL cdna:known chromosome:CEL140:IV:5162816:5163031:-1 gene:C24D10.7 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_069362 2/11 Cross Hyb Matching Probes A 
NM_062470 3/11 Cross Hyb Matching Probes A 
NM_062474 5/11 Cross Hyb Matching Probes A 
GENEFINDER00000024763 1/11 Cross Hyb Matching Probes None
SNAP00000024738 1/11 Cross Hyb Matching Probes None
SNAP00000005480 4/11 Cross Hyb Matching Probes None
GENEFINDER00000005501 4/11 Cross Hyb Matching Probes None
SNAP00000040845 3/11 Cross Hyb Matching Probes None
GENEFINDER00000040847 3/11 Cross Hyb Matching Probes None
SNAP00000004248 2/11 Cross Hyb Matching Probes None
GENEFINDER00000004271 2/11 Cross Hyb Matching Probes None
ZK337.1c.2 2/11 Cross Hyb Matching Probes None
T23B7.1 3/11 Cross Hyb Matching Probes A 
F11G11.8 4/11 Cross Hyb Matching Probes None
K07F5.5.2 2/11 Cross Hyb Matching Probes A 
K07F5.5.1 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4842593-4842809(+) 91.67 91.67
chrII:4860130-4860346(-) 92.13 92.13
chrIV:5165506-5165722(-) 100.0 100.0
chrIV:5162821-5163037(-) 98.61 98.61
Public Domain and Genome References
Gene Title
Ensembl C24D10.7
Entrez Gene 259569 Entrez gene
SwissProt Q76NP8 EMBL-EBI
WormBase CE16879 Wormbase
Functional Annotations
Protein Domains
Database ID Description E-Value
Pfam IPR008498 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF780 3.1E-51
Pfam IPR008498 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF780 3.1E-51
Sequence
Target Sequence 
>C. ELEGANS:172527_X_AT
atggcggacaagtcggcttacatgggcgctggtggctatggatcgggctacatgggatcc
aatgcttcttcgtcaggttatgcccgcgaagactatgcacaaggaggcaatggtggtggt
ggacagcagcagaaccaaggatccggaggaaacaccaacccaggtggacaggtcttcaag
gcccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCGGACAAGTCGGCTTACATGG 596 53 13 Antisense
TTACATGGGCGCTGGTGGCTATGGA 447 683 30 Antisense
TGGTGGCTATGGATCGGGCTACATG 28 551 42 Antisense
GGCTACATGGGATCCAATGCTTCTT 450 537 58 Antisense
AATGCTTCTTCGTCAGGTTATGCCC 44 167 73 Antisense
CAGGTTATGCCCGCGAAGACTATGC 346 207 86 Antisense
GCCCGCGAAGACTATGCACAAGGAG 589 285 94 Antisense
GGCAATGGTGGTGGTGGACAGCAGC 308 533 118 Antisense
GACAGCAGCAGAACCAAGGATCCGG 694 367 134 Antisense
GAGGAAACACCAACCCAGGTGGACA 277 405 158 Antisense
CAGGTGGACAGGTCTTCAAGGCCCG 456 207 173 Antisense
Sequence Source Affymetrix Proprietary Database