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[172525_x_at]

Description T19E10.1B /REP_DB=WormBase Gene ID /WP=CE01671 /TR=Q9U364 /GB=CAB54311.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 51      6grp_cgc > 59      6grp_cgc_sub > Da      6grp_rule_based > S6      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 167.8
(3)
A 		162.4
(2.6)
A 		129.7
(0.5)
A 		76
(-3)
A 		92
B 140.4
(1.2)
A 		152.9
(2.2)
A 		164.7
(3)
A 		81.4
(-3)
A 		83
C 127.7
(-0.7)
A 		206.8
(3)
A 		147.2
(0.2)
A 		77
(-3)
A 		130
avr 145.3
(1.2) 		174
(3) 		147.2
(1.3) 		78.1
(-3) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 441
1 2 3 4 5 6 range
A 74.5
(-3)
A 		160.8
(-1.8)
A 		83.1
(-2.9)
A 		117.9
(-2.4)
A 		390.2
(1.4)
P 		505.9
(3)
P 		431
B 125.3
(-2.4)
A 		116.8
(-2.6)
A 		87.9
(-3)
A 		161
(-1.9)
A 		317.3
(0.5)
P 		478
(3)
P 		390
C 186.7
(-1.4)
A 		116.8
(-2.3)
A 		66.6
(-3)
A 		77.6
(-2.9)
A 		271.4
(-0.2)
P 		507.4
(3)
P 		441
avr 128.8
(-2.3) 		131.5
(-2.2) 		79.2
(-3) 		118.8
(-2.4) 		326.3
(0.5) 		497.1
(3) 		418
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 61.1
(3)
A 		35.3
(-0.1)
A 		33.9
(-0.3)
A 		11.1
(-3)
A 		50
B 44.8
(3)
A 		37.8
(1.5)
A 		38.2
(1.6)
A 		17.3
(-3)
A 		28
C 42.3
(0.8)
A 		59.4
(3)
A 		51.3
(2)
A 		13
(-3)
A 		46
avr 49.4
(3) 		44.2
(2.1) 		41.1
(1.6) 		13.8
(-3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 165
1 2 3 4 5 6 range
A 13.7
(-3)
A 		57.2
(-0.6)
A 		18.1
(-2.8)
A 		29.9
(-2.1)
A 		117.7
(2.7)
P 		123.2
(3)
P 		110
B 43.6
(-2.2)
A 		38.9
(-2.3)
A 		21.4
(-3)
A 		42.7
(-2.2)
A 		128.9
(1.1)
P 		178.3
(3)
P 		157
C 69.2
(-0.9)
A 		35.6
(-2.2)
A 		17
(-2.9)
A 		15.6
(-3)
A 		87.8
(-0.2)
P 		169.8
(3)
P 		154
avr 42.2
(-2) 		43.9
(-1.9) 		18.8
(-3) 		29.4
(-2.5) 		111.5
(1) 		157.1
(3) 		138
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172525_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3088
Sequence Type Exemplar sequence
Representative Public ID T19E10.1B NCBI
Target Description T19E10.1B /REP_DB=WormBase Gene ID /WP=CE01671 /TR=Q9U364 /GB=CAB54311.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063917(11), NM_063918(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063917 NCBI Caenorhabditis elegans T19E10.1b (T19E10.1) mRNA, complete cds. 11/11 A 
NM_063918 NCBI Caenorhabditis elegans T19E10.1a (T19E10.1) mRNA, complete cds. 11/11 A 
SNAP00000020896 ENSEMBL cdna:SNAP chromosome:CEL140:II:10778853:10783176:-1 11/11 None
GENEFINDER00000020897 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10778853:10783201:-1 11/11 None
T19E10.1b ENSEMBL cdna:known chromosome:CEL140:II:10778335:10783199:-1 gene:T19E10.1 11/11 A 
T19E10.1a ENSEMBL cdna:known chromosome:CEL140:II:10778853:10783176:-1 gene:T19E10.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10778849-10783173(-) 100.0 100.0
Public Domain and Genome References
Ensembl T19E10.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54311 Hypothetical protein T19E10.1b [Caenorhabditis elegans] ref|NP_496318.1| T19E10.1b [Caenorhabditis elegans] 0.0
blast CAA86788 Hypothetical protein T19E10.1a [Caenorhabditis elegans] ref|NP_496319.1| T19E10.1a [Caenorhabditis elegans] 0.0
blast CAE59604 Hypothetical protein CBG03012 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001357 EMBL-EBI BRCT 2.6E-4
Pfam IPR001357 EMBL-EBI BRCT 1.7E-7
Pfam IPR000219 EMBL-EBI DH domain 6.7E-18
Pfam IPR001357 EMBL-EBI BRCT 2.6E-4
Pfam IPR001357 EMBL-EBI BRCT 1.7E-7
Pfam IPR000219 EMBL-EBI DH domain 6.7E-18
Sequence
Target Sequence 
>C. ELEGANS:172525_X_AT
ttctactcgtcggatccatcagatatgaatgagatcaacgatgcgatggtttcggatatg
acaactcgatactttagaaatctttgcggagcgaaaccacaatatggacacggcagtcag
atgaacattacggtcagtgaacgatctacacaaaacgaatggtcacacaatgagtcgttt
atgccaccaccacagtcacagagtcgaatgcgacgagcgttcagtaatgctcaactcaca
cttgccaccacgctgggctttggcagaaatcagagtcgaaataacttgggacaaattaac
gagaacacgacatttctgcagtctcccagagtttcgtgtgatccagcagctctcgcaaac
atgacgtcagtcggcggattgcctggatgccaaagcgaatctgaatcgacgccaaagcga
ggaattcgttctcgcctcacctcgacaacgttcctcggcggccgacacaacatactcgga
cgaaacacgtcgatgcgccgtcaggctaccggatttgctcattcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTACTCGTCGGATCCATCAGATA 249 691 2233 Antisense
CACAATGAGTCGTTTATGCCACCAC 385 193 2398 Antisense
CACCACCACAGTCACAGAGTCGAAT 629 201 2417 Antisense
GCGTTCAGTAATGCTCAACTCACAC 636 291 2449 Antisense
GAACACGACATTTCTGCAGTCTCCC 573 351 2535 Antisense
CTCCCAGAGTTTCGTGTGATCCAGC 274 233 2555 Antisense
CAGCAGCTCTCGCAAACATGACGTC 274 205 2576 Antisense
GTCAGTCGGCGGATTGCCTGGATGC 196 467 2598 Antisense
AGCGAGGAATTCGTTCTCGCCTCAC 490 81 2648 Antisense
GGACGAAACACGTCGATGCGCCGTC 425 521 2710 Antisense
CAGGCTACCGGATTTGCTCATTCGG 39 209 2734 Antisense
Sequence Source Affymetrix Proprietary Database