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[172524_x_at]

Description M01B12.1 /REP_DB=WormBase Gene ID /WP=CE18059 /TR=O61863 /GB=AAC17560.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 31      6grp_total > 21      4grp_total > 12      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 358
1 2 3 4 range
A 132.2
(-2.4)
A 		100.7
(-3)
M 		120.8
(-2.6)
A 		435.8
(3)
P 		335
B 214.9
(3)
P 		142.2
(-1.8)
A 		123.8
(-3)
A 		184
(1)
P 		91
C 201.1
(0)
M 		163.6
(-0.9)
A 		77.7
(-3)
A 		320.5
(3)
P 		243
avr 182.7
(-0.8) 		135.5
(-2.2) 		107.4
(-3) 		313.4
(3) 		206

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 213
1 2 3 4 5 6 range
A 187.5
(2.2)
P 		140.8
(0.7)
P 		214
(3)
P 		148.9
(1)
P 		136.1
(0.6)
M 		21.5
(-3)
A 		193
B 122.1
(-1.2)
P 		153
(0.7)
P 		189.3
(3)
P 		94.5
(-2.9)
A 		124.5
(-1.1)
P 		93.5
(-3)
P 		96
C 90.9
(-3)
A 		234.6
(3)
P 		120.2
(-1.8)
A 		122.8
(-1.7)
A 		94.3
(-2.9)
A 		127.4
(-1.5)
P 		144
avr 133.5
(0.3) 		176.1
(3) 		174.5
(2.9) 		122.1
(-0.4) 		118.3
(-0.6) 		80.8
(-3) 		95
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 48.1
(0.8)
A 		21.9
(-3)
M 		31.6
(-1.6)
A 		63.8
(3)
P 		42
B 68.5
(3)
P 		35.1
(-2)
A 		28.7
(-3)
A 		39.2
(-1.4)
P 		40
C 66.6
(3)
M 		47
(0)
A 		27.1
(-3)
A 		54
(1.1)
P 		40
avr 61.1
(3) 		34.7
(-2) 		29.1
(-3) 		52.3
(1.4) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 34.6
(0.9)
P 		50.1
(3)
P 		46.6
(2.5)
P 		37.8
(1.4)
P 		41.1
(1.8)
M 		5.2
(-3)
A 		45
B 42.5
(1.1)
P 		50.9
(3)
P 		46
(1.9)
P 		25
(-3)
A 		50.6
(2.9)
P 		34.9
(-0.7)
P 		26
C 33.7
(-1.8)
A 		71.6
(3)
P 		30.6
(-2.2)
A 		24.7
(-3)
A 		30.5
(-2.3)
A 		42.6
(-0.7)
P 		47
avr 36.9
(-1.1) 		57.5
(3) 		41.1
(-0.3) 		29.2
(-2.7) 		40.7
(-0.4) 		27.6
(-3) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172524_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.256
Sequence Type Exemplar sequence
Representative Public ID M01B12.1 NCBI
Target Description M01B12.1 /REP_DB=WormBase Gene ID /WP=CE18059 /TR=O61863 /GB=AAC17560.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058700(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058700 NCBI Caenorhabditis elegans M01B12.1 (M01B12.1) mRNA, complete cds. 11/11 None
M01B12.1 ENSEMBL cdna:known chromosome:CEL140:I:3087241:3087940:1 gene:M01B12.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076204 2/11 Cross Hyb Matching Probes A 
NM_068671 5/11 Cross Hyb Matching Probes A 
NM_070965 5/11 Cross Hyb Matching Probes A 
NM_001027290 5/11 Cross Hyb Matching Probes None
SNAP00000031641 6/11 Cross Hyb Matching Probes None
GENEFINDER00000031644 6/11 Cross Hyb Matching Probes None
SNAP00000040246 5/11 Cross Hyb Matching Probes None
SNAP00000002696 5/11 Cross Hyb Matching Probes None
SNAP00000032774 6/11 Cross Hyb Matching Probes None
SNAP00000040499 6/11 Cross Hyb Matching Probes None
GENEFINDER00000040500 6/11 Cross Hyb Matching Probes None
H31G24.2 6/11 Cross Hyb Matching Probes A 
T05F1.11 5/11 Cross Hyb Matching Probes None
Y52E8A.6 5/11 Cross Hyb Matching Probes A 
B0478.2 5/11 Cross Hyb Matching Probes A 
R09A1.4 5/11 Cross Hyb Matching Probes A 
C12D12.6 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3087240-3087746(+) 13.98 84.3
Public Domain and Genome References
Gene Title
Ensembl M01B12.1
Entrez Gene 187362 Entrez gene
SwissProt O61863 EMBL-EBI
WormBase CE18059 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6278 RNA-dependent DNA replication inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3723 RNA binding inferred from electronic annotation QuickGO AmiGO
3964 RNA-directed DNA polymerase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC17560 Hypothetical protein M01B12.1 [Caenorhabditis elegans] ref|NP_491101.1| M01B12.1 [Caenorhabditis elegans] 8.0E-88
blast AAP13750 Hypothetical protein Y52E8A.6 [Caenorhabditis elegans] ref|NP_001022461.1| Y52E8A.6 [Caenorhabditis elegans] 2.0E-59
blast NP_501072 B0478.2 [Caenorhabditis elegans] 4.0E-57
Sequence
Target Sequence 
>C. ELEGANS:172524_X_AT
cccttgtgggtctacaacccgatctctaaaaatctgattaaacaactggagtcgccactg
aagtttttctcgagaagagtcttccaacgctgcaatctatcatactcatcatatgaaaac
cgtctagctcagatgaaccaaaagtcagttcaacacctgcggattcttcaaatattgagg
acctatcacaacatcctgtctggtgaataccactttccaaatgccgcatcaactgtgagg
aaggctcgctcgtccagatatccgtacatgatgtgcccttgtggatcaatcaacgaaagc
ttcctactagtcaatcttcacctatggaaccgatcattcaaattattcaagtttgtttct
cccggtgattattct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCTTGTGGGTCTACAACCCGATCT 163 259 73 Antisense
GAGTCGCCACTGAAGTTTTTCTCGA 55 401 121 Antisense
AACGCTGCAATCTATCATACTCATC 539 145 158 Antisense
AGTTCAACACCTGCGGATTCTTCAA 177 63 219 Antisense
GACCTATCACAACATCCTGTCTGGT 528 383 252 Antisense
GAATACCACTTTCCAAATGCCGCAT 293 325 277 Antisense
CAACTGTGAGGAAGGCTCGCTCGTC 639 185 302 Antisense
GCTCGTCCAGATATCCGTACATGAT 596 299 320 Antisense
GATGTGCCCTTGTGGATCAATCAAC 589 407 342 Antisense
AGCTTCCTACTAGTCAATCTTCACC 142 79 370 Antisense
GTTTGTTTCTCCCGGTGATTATTCT 479 451 423 Antisense
Sequence Source Affymetrix Proprietary Database