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[172523_x_at]

Description T24A6.17 /REP_DB=WormBase Gene ID /WP=CE14156 /TR=O61953 /GB=AAC17804.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 18      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 17
(-3)
A 		43.7
(0.3)
A 		54.1
(1.6)
A 		64.9
(3)
A 		48
B 48.5
(-0.7)
A 		76.4
(1.2)
A 		13.1
(-3)
A 		103.7
(3)
P 		91
C 44.5
(-2.3)
A 		53.8
(-1.7)
A 		31.3
(-3)
A 		139
(3)
P 		108
avr 36.7
(-2.7) 		58
(-0.8) 		32.8
(-3) 		102.5
(3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 123
1 2 3 4 5 6 range
A 90.6
(2.3)
A 		34.9
(-3)
A 		61.7
(-0.4)
P 		45.6
(-2)
A 		97.6
(3)
P 		87.8
(2.1)
P 		63
B 74
(-0.1)
P 		42
(-3)
P 		61.1
(-1.3)
A 		52.3
(-2.1)
A 		89.3
(1.2)
P 		109.1
(3)
P 		67
C 85.5
(0.7)
P 		51.1
(-1)
M 		9.9
(-3)
A 		58.7
(-0.6)
A 		110.1
(1.9)
P 		132.4
(3)
P 		123
avr 83.4
(0.6) 		42.7
(-3) 		44.2
(-2.9) 		52.2
(-2.2) 		99
(2) 		109.8
(3) 		67
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 6.2
(-3)
A 		9.5
(-0.5)
A 		14.1
(3)
A 		9.5
(-0.5)
A 		8
B 15.5
(0.9)
A 		18.9
(2)
A 		3
(-3)
A 		22.1
(3)
P 		19
C 14.7
(-1.2)
A 		15.5
(-0.8)
A 		10.9
(-3)
A 		23.4
(3)
P 		13
avr 12.1
(-1.1) 		14.6
(0.5) 		9.3
(-3) 		18.3
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 16.7
(-1.3)
A 		12.4
(-2.7)
A 		13.4
(-2.4)
P 		11.6
(-3)
A 		29.5
(3)
P 		21.4
(0.3)
P 		18
B 25.8
(-0.3)
P 		14
(-3)
P 		14.8
(-2.8)
A 		13.9
(-3)
A 		36.3
(2)
P 		40.7
(3)
P 		27
C 31.7
(1.2)
P 		15.6
(-1.1)
M 		2.5
(-3)
A 		11.8
(-1.7)
A 		35.6
(1.8)
P 		44.3
(3)
P 		42
avr 24.7
(0.4) 		14
(-2.1) 		10.2
(-3) 		12.4
(-2.5) 		33.8
(2.6) 		35.5
(3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172523_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15334
Sequence Type Exemplar sequence
Representative Public ID T24A6.17 NCBI
Target Description T24A6.17 /REP_DB=WormBase Gene ID /WP=CE14156 /TR=O61953 /GB=AAC17804.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071603(11), NM_071602(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071603 NCBI Caenorhabditis elegans F40C5.2 (F40C5.2) mRNA, complete cds. 11/11 A 
NM_071602 NCBI Caenorhabditis elegans T24A6.17 (T24A6.17) mRNA, complete cds. 11/11 None
SNAP00000004813 ENSEMBL cdna:SNAP chromosome:CEL140:III:9408999:9409633:-1 9/11 None
GENEFINDER00000004822 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9409058:9409453:-1 9/11 None
SNAP00000026430 ENSEMBL cdna:SNAP chromosome:CEL140:V:3570841:3571314:1 11/11 None
GENEFINDER00000026436 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3571021:3573982:1 9/11 None
SNAP00000027435 ENSEMBL cdna:SNAP chromosome:CEL140:V:3563967:3564440:-1 11/11 None
GENEFINDER00000027436 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3563929:3564283:-1 9/11 None
T24A6.17 ENSEMBL cdna:known chromosome:CEL140:V:3564065:3564260:-1 gene:T24A6.17 11/11 None
F40C5.2 ENSEMBL cdna:known chromosome:CEL140:V:3569997:3571216:1 gene:F40C5.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000026775 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7601584-7601777(+) 90.67 90.67
chrV:3571020-3571216(+) 100.0 100.0
chrV:19571821-19572017(+) 99.33 99.33
chrIII:9409255-9409449(-) 99.33 99.33
chrIII:5783387-5783580(-) 92.0 92.0
chrV:3564064-3564260(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl T24A6.17
F40C5.2
Entrez Gene 185515 Entrez gene
188834 Entrez gene
SwissProt O61953 EMBL-EBI
WormBase CE23710 Wormbase
CE23710 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17803 Hypothetical protein T24A6.16 [Caenorhabditis elegans] 1.0E-165
blast AAF39797 Hypothetical protein F40C5.1 [Caenorhabditis elegans] ref|NP_504005.1| F40C5.1 [Caenorhabditis elegans] 1.0E-162
blast NP_504002 T24A6.16 [Caenorhabditis elegans] 1.0E-134
blast AAC17804 Hypothetical protein T24A6.17 [Caenorhabditis elegans] gb|AAF39798.1| Hypothetical protein F40C5.2 [Caenorhabditis elegans] ref|NP_504003.2| T24A6.17 [Caenorhabditis elegans] ref|NP_504004.1| F40C5.2 [Caenorhabditis elegans] 5.0E-73
blast AAC17804 Hypothetical protein T24A6.17 [Caenorhabditis elegans] gb|AAF39798.1| Hypothetical protein F40C5.2 [Caenorhabditis elegans] ref|NP_504003.2| T24A6.17 [Caenorhabditis elegans] ref|NP_504004.1| F40C5.2 [Caenorhabditis elegans] 2.0E-12
blast AAC17804 Hypothetical protein T24A6.17 [Caenorhabditis elegans] gb|AAF39798.1| Hypothetical protein F40C5.2 [Caenorhabditis elegans] ref|NP_504003.2| T24A6.17 [Caenorhabditis elegans] ref|NP_504004.1| F40C5.2 [Caenorhabditis elegans] 8.0E-11
blast CAB16484 Hypothetical protein Y53C12A.1 [Caenorhabditis elegans] ref|NP_496095.1| WEE homolog family member (wee-1.3) [Caenorhabditis elegans] sp|O18209|PMYT1_CAEEL Membrane-associated tyrosine-and threonine-specific cdc2-inhibitory kinase (Myt1 kinase) (Lethal protein 37) 8.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000026430 1 4-26
SNAP00000027435 1 4-26
Sequence
Target Sequence 
>C. ELEGANS:172523_X_AT
atggaattggcttgggaaccggaagtaccggcggtagcggtggccatccgactgctcgct
tccatgctgcaattgaagaccgacaatcggaaattggtgctcaatttgtccacaatcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGAATTGGCTTGGGAACCGGAAG 596 1 13 Antisense
TGGAATTGGCTTGGGAACCGGAAGT 200 545 14 Antisense
GAAGTACCGGCGGTAGCGGTGGCCA 249 185 34 Antisense
GCTCGCTTCCATGCTGCAATTGAAG 572 299 66 Antisense
TCGCTTCCATGCTGCAATTGAAGAC 107 599 68 Antisense
GCTTCCATGCTGCAATTGAAGACCG 20 307 70 Antisense
TCCATGCTGCAATTGAAGACCGACA 616 585 73 Antisense
GCTGCAATTGAAGACCGACAATCGG 225 297 78 Antisense
GACCGACAATCGGAAATTGGTGCTC 438 381 90 Antisense
ATTGGTGCTCAATTTGTCCACAATC 676 3 105 Antisense
GGTGCTCAATTTGTCCACAATCAAC 302 501 108 Antisense
Sequence Source Affymetrix Proprietary Database