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[172522_x_at]

Description F14D2.10 /REP_DB=WormBase Gene ID /WP=CE16985 /TR=O44806 /GB=AAB94963.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 96      4grp_high_8_8 > 20      6grp_total > 85      4grp_total > 19      6grp_high1_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 69.4
(0.9)
P 		62.9
(0.3)
A 		25.2
(-3)
P 		93.2
(3)
P 		68
B 71.8
(1.6)
P 		80.2
(3)
P 		44.2
(-3)
A 		78.4
(2.7)
P 		36
C 40.9
(-3)
A 		67.4
(-1.2)
P 		42
(-2.9)
P 		129
(3)
P 		88
avr 60.7
(-0.8) 		70.2
(0.1) 		37.1
(-3) 		100.2
(3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 83
(0.1)
P 		59.1
(-3)
P 		63
(-2.5)
P 		105.5
(3)
P 		62.2
(-2.6)
P 		85.2
(0.4)
A 		46
B 77.4
(-0.5)
P 		42.5
(-3)
P 		61.3
(-1.7)
P 		75.8
(-0.6)
P 		101.2
(1.2)
P 		126.3
(3)
P 		84
C 87.3
(-0.1)
P 		57.4
(-3)
A 		112.5
(2.4)
P 		101.8
(1.3)
P 		106.5
(1.8)
P 		118.7
(3)
P 		61
avr 82.6
(0.1) 		53
(-3) 		78.9
(-0.3) 		94.4
(1.4) 		90
(0.9) 		110.1
(3) 		57
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 25.3
(3)
P 		13.7
(-0.7)
A 		6.6
(-3)
P 		13.6
(-0.8)
P 		19
B 22.9
(3)
P 		19.8
(1.5)
P 		10.2
(-3)
A 		16.7
(0.1)
P 		13
C 13.5
(-3)
A 		19.4
(1.3)
P 		14.6
(-2.2)
P 		21.8
(3)
P 		8
avr 20.6
(3) 		17.6
(1.2) 		10.5
(-3) 		17.4
(1.1) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 15.3
(-2.3)
P 		21
(0.3)
P 		13.7
(-3)
P 		26.8
(3)
P 		18.8
(-0.7)
P 		20.7
(0.2)
A 		13
B 26.9
(-0.7)
P 		14.1
(-3)
P 		14.9
(-2.9)
P 		20.1
(-1.9)
P 		41.1
(1.9)
P 		47.1
(3)
P 		33
C 32.4
(1)
P 		17.5
(-3)
A 		28.6
(0)
P 		20.5
(-2.2)
P 		34.5
(1.6)
P 		39.7
(3)
P 		22
avr 24.9
(-0.6) 		17.5
(-3) 		19.1
(-2.5) 		22.5
(-1.4) 		31.5
(1.6) 		35.8
(3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172522_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5489
Sequence Type Exemplar sequence
Representative Public ID F14D2.10 NCBI
Target Description F14D2.10 /REP_DB=WormBase Gene ID /WP=CE16985 /TR=O44806 /GB=AAB94963.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062113(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062113 NCBI Caenorhabditis elegans F14D2.10 (F14D2.10) mRNA, complete cds. 11/11 None
GENEFINDER00000037079 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3356380:3356654:-1 11/11 None
GENEFINDER00000037080 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3351921:3352195:1 11/11 None
F14D2.10 ENSEMBL cdna:known chromosome:CEL140:II:3351921:3352195:1 gene:F14D2.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_059327 7/11 Cross Hyb Matching Probes A 
NM_058295 3/11 Cross Hyb Matching Probes A 
NM_059325 7/11 Cross Hyb Matching Probes A 
GENEFINDER00000037998 7/11 Cross Hyb Matching Probes None
SNAP00000016209 1/11 Cross Hyb Matching Probes None
GENEFINDER00000016218 3/11 Cross Hyb Matching Probes None
GENEFINDER00000012795 7/11 Cross Hyb Matching Probes None
SNAP00000037066 3/11 Cross Hyb Matching Probes None
SNAP00000037070 3/11 Cross Hyb Matching Probes None
Y48G1BL.4 3/11 Cross Hyb Matching Probes A 
Y76G2A.1 7/11 Cross Hyb Matching Probes A 
C06A5.5 7/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Ensembl F14D2.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494514 F14D2.10 [Caenorhabditis elegans] 1.0E-37
blast NP_490696 Y48G1BL.4 [Caenorhabditis elegans] gb|AAF60689.1| Hypothetical protein Y48G1BL.4 [Caenorhabditis elegans] 8.0E-30
blast AAC78488 Hypothetical protein Y76G2A.1 [Caenorhabditis elegans] gb|AAB52444.1| Hypothetical protein C06A5.5 [Caenorhabditis elegans] ref|NP_491728.1| C06A5.5 [Caenorhabditis elegans] ref|NP_491726.1| Y76G2A.1 [Caenorhabditis elegans] 3.0E-21
Sequence
Target Sequence 
>C. ELEGANS:172522_X_AT
tctacatcggtcgtttcccaaatagagcatccgatcatgatgccgagcacttcttctgcg
gatatgaaaagctgcctgatgccataatgaagaacgtatttggtgattttcaagatcaga
gcgatgctgacgacatcatttgtgatgagcagacaagaattttgcttgtggagaacgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTACATCGGTCGTTTCCCAAATAG 116 611 23 Antisense
GTTTCCCAAATAGAGCATCCGATCA 392 451 35 Antisense
ATCCGATCATGATGCCGAGCACTTC 691 37 51 Antisense
GATCATGATGCCGAGCACTTCTTCT 387 421 55 Antisense
CCGAGCACTTCTTCTGCGGATATGA 693 263 65 Antisense
CTGCGGATATGAAAAGCTGCCTGAT 257 203 78 Antisense
AAAGCTGCCTGATGCCATAATGAAG 206 125 90 Antisense
GAAGAACGTATTTGGTGATTTTCAA 340 339 111 Antisense
GATTTTCAAGATCAGAGCGATGCTG 386 427 127 Antisense
GAGCGATGCTGACGACATCATTTGT 678 385 141 Antisense
AAGAATTTTGCTTGTGGAGAACGCG 516 151 177 Antisense
Sequence Source Affymetrix Proprietary Database