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[172521_x_at]

Description Y47H9C.12 /REP_DB=WormBase Gene ID /WP=CE20272 /TR=Q9XWD3 /GB=CAA21742.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 60      4grp_total > 08      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 4.3
(-3)
A 		54.4
(0.2)
A 		27.7
(-1.5)
A 		97.4
(3)
A 		93
B 55.8
(3)
A 		12.3
(-3)
A 		45.8
(1.6)
A 		46.8
(1.8)
A 		44
C 15.9
(-2.6)
A 		8.6
(-3)
A 		61.3
(-0.4)
A 		128.4
(3)
A 		120
avr 25.3
(-3) 		25.1
(-3) 		44.9
(-1.2) 		90.9
(3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 32.2
(-0.2)
A 		5
(-3)
A 		63.5
(3)
A 		15.7
(-1.9)
A 		28.4
(-0.6)
A 		8.8
(-2.6)
A 		59
B 24.8
(-0.4)
A 		6.6
(-2.6)
A 		3.5
(-3)
A 		52.5
(3)
A 		12
(-2)
A 		22.7
(-0.6)
A 		49
C 11.4
(-2.3)
A 		5.7
(-2.8)
A 		26.8
(-0.8)
A 		65.8
(3)
A 		22
(-1.3)
A 		4
(-3)
A 		62
avr 22.8
(-0.4) 		5.8
(-3) 		31.3
(0.9) 		44.7
(3) 		20.8
(-0.7) 		11.8
(-2.1) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 1.6
(-3)
A 		11.8
(1.8)
A 		7.2
(-0.4)
A 		14.3
(3)
A 		13
B 17.8
(3)
A 		3
(-3)
A 		10.6
(0.1)
A 		10
(-0.2)
A 		15
C 5.3
(-2.1)
A 		2.5
(-3)
A 		21.4
(2.9)
A 		21.6
(3)
A 		19
avr 8.2
(-1.5) 		5.8
(-3) 		13.1
(1.6) 		15.3
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 5.9
(-1)
A 		1.8
(-3)
A 		13.8
(3)
A 		4
(-1.9)
A 		8.6
(0.4)
A 		2.2
(-2.8)
A 		12
B 8.6
(0.6)
A 		2.2
(-2.4)
A 		0.8
(-3)
A 		13.9
(3)
A 		4.9
(-1.1)
A 		8.5
(0.5)
A 		13
C 4.2
(-1.5)
A 		1.7
(-2.8)
A 		6.8
(-0.2)
A 		13.2
(3)
A 		7.1
(-0.1)
A 		1.3
(-3)
A 		12
avr 6.2
(0) 		1.9
(-3) 		7.1
(0.7) 		10.4
(3) 		6.9
(0.5) 		4
(-1.5) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172521_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1399
Sequence Type Exemplar sequence
Representative Public ID Y47H9C.12 NCBI
Target Description Y47H9C.12 /REP_DB=WormBase Gene ID /WP=CE20272 /TR=Q9XWD3 /GB=CAA21742.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060615(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060615 NCBI Caenorhabditis elegans Y47H9C.12 (Y47H9C.12) mRNA, complete cds. 11/11 None
SNAP00000036888 ENSEMBL cdna:SNAP chromosome:CEL140:I:11904823:11906518:1 9/11 None
Y47H9C.12 ENSEMBL cdna:known chromosome:CEL140:I:11904823:11905087:1 gene:Y47H9C.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000036904 2/11 Cross Hyb Matching Probes None
SNAP00000036890 2/11 Cross Hyb Matching Probes None
GENEFINDER00000036899 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11904753-11905018(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y47H9C.12
Entrez Gene 190003 Entrez gene
SwissProt Q9XWD3 EMBL-EBI
WormBase CE20272 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92983 Hypothetical protein T12G3.4 [Caenorhabditis elegans] ref|NP_502282.1| T12G3.4 [Caenorhabditis elegans] 2.0E-46
blast CAE62168 Hypothetical protein CBG06215 [Caenorhabditis briggsae] 7.0E-43
blast CAA21742 Hypothetical protein Y47H9C.12 [Caenorhabditis elegans] ref|NP_493016.1| Y47H9C.12 [Caenorhabditis elegans] 6.0E-33
blast CAA21737 Hypothetical protein Y47H9C.11 [Caenorhabditis elegans] ref|NP_493020.2| Y47H9C.11 [Caenorhabditis elegans] 1.0E-23
blast CAA21742 Hypothetical protein Y47H9C.12 [Caenorhabditis elegans] ref|NP_493016.1| Y47H9C.12 [Caenorhabditis elegans] 5.0E-23
Protein Domains
Database ID Description E-Value
Pfam IPR002673 EMBL-EBI Ribosomal L29e protein 9.2E-14
Pfam IPR004141 EMBL-EBI Strictosidine synthase 2.8E-43
Sequence
Target Sequence 
>C. ELEGANS:172521_X_AT
gctctcgtcgcaatggcaaatccaaggaaatggaggatttgattgaaaagaaacggatcc
aaaagacaattctcttgcggaatagcaaaatcgccaccagagcattcattctgtcccttt
atctccaaaaaattccagttttgaaggcatacgacacgttttgtggggttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCTCGTCGCAATGGCAAATCCAA 351 299 26 Antisense
GTCGCAATGGCAAATCCAAGGAAAT 88 475 32 Antisense
GGATCCAAAAGACAATTCTCTTGCG 390 513 80 Antisense
AAGACAATTCTCTTGCGGAATAGCA 517 151 88 Antisense
GGAATAGCAAAATCGCCACCAGAGC 462 533 104 Antisense
AAATCGCCACCAGAGCATTCATTCT 327 119 113 Antisense
CACCAGAGCATTCATTCTGTCCCTT 31 203 120 Antisense
TTCTGTCCCTTTATCTCCAAAAAAT 147 695 134 Antisense
TCCAGTTTTGAAGGCATACGACACG 3 591 159 Antisense
GAAGGCATACGACACGTTTTGTGGG 199 333 168 Antisense
CATACGACACGTTTTGTGGGGTTCT 213 167 173 Antisense
Sequence Source Affymetrix Proprietary Database