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[172520_x_at]

Description Y62F5A.1A /REP_DB=WormBase Gene ID /WP=CE24544 /TR=Q9U1W3 /GB=CAB57912.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 88      4grp_high_8_8 > 40      6grp_highest_nonorm > 95      6grp_total > 88      4grp_total > 55      6grp_highest_sub > Da      6grp_cgc > 59      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 283
1 2 3 4 range
A 658.1
(3)
P 		522
(-3)
P 		606.6
(0.7)
P 		531.3
(-2.6)
P 		136
B 724.5
(3)
P 		527
(-2.2)
A 		497.6
(-3)
P 		507.6
(-2.7)
P 		227
C 780.4
(3)
P 		515.4
(-3)
M 		558.9
(-2)
P 		521.8
(-2.9)
P 		265
avr 721
(3) 		521.5
(-3) 		554.4
(-2) 		520.2
(-3) 		201

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 813
1 2 3 4 5 6 range
A 707.2
(-0.4)
P 		583.7
(-1.8)
P 		483.1
(-3)
P 		519.6
(-2.6)
P 		1001.4
(3)
P 		928.8
(2.2)
P 		518
B 550.4
(-2.4)
P 		501.1
(-3)
P 		516.7
(-2.8)
P 		614
(-1.5)
P 		695.8
(-0.5)
P 		966.1
(3)
P 		465
C 510.8
(-3)
P 		551.9
(-2.7)
P 		519.9
(-2.9)
P 		536.1
(-2.8)
P 		655.8
(-1.9)
P 		1296.3
(3)
P 		786
avr 589.5
(-2.1) 		545.6
(-2.6) 		506.6
(-3) 		556.6
(-2.5) 		784.3
(-0) 		1063.7
(3) 		557
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 181
1 2 3 4 range
A 239.6
(3)
P 		113.3
(-1.7)
P 		158.6
(-0)
P 		77.8
(-3)
P 		162
B 231
(3)
P 		130.2
(-1.9)
A 		115.3
(-2.7)
P 		108.2
(-3)
P 		123
C 258.3
(3)
P 		148.2
(-0.9)
M 		194.8
(0.8)
P 		88
(-3)
P 		170
avr 243
(3) 		130.6
(-1.4) 		156.2
(-0.4) 		91.3
(-3) 		152

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 329
1 2 3 4 5 6 range
A 130.4
(-2.2)
P 		207.6
(0.1)
P 		105.2
(-3)
P 		131.8
(-2.2)
P 		302.2
(3)
P 		226.1
(0.7)
P 		197
B 191.5
(-1.3)
P 		166.8
(-1.9)
P 		125.5
(-3)
P 		162.6
(-2.1)
P 		282.7
(1)
P 		360.2
(3)
P 		235
C 189.3
(-1.5)
P 		168.4
(-1.9)
P 		132.3
(-2.5)
P 		107.8
(-3)
P 		212.2
(-1.1)
P 		433.9
(3)
P 		326
avr 170.4
(-1.6) 		180.9
(-1.4) 		121
(-3) 		134.1
(-2.6) 		265.7
(1) 		340.1
(3) 		219
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172520_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2761
Sequence Type Exemplar sequence
Representative Public ID Y62F5A.1A NCBI
Target Description Y62F5A.1A /REP_DB=WormBase Gene ID /WP=CE24544 /TR=Q9U1W3 /GB=CAB57912.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064063(11), NM_064062(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064063 NCBI Caenorhabditis elegans MeDiaTor family member (mdt-8) (mdt-8) mRNA, complete cds. 11/11 A 
NM_064062 NCBI Caenorhabditis elegans MeDiaTor family member (mdt-8) (mdt-8) mRNA, complete cds. 11/11 A 
GENEFINDER00000004785 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11531178:11534382:-1 10/11 None
Y62F5A.1a ENSEMBL cdna:known chromosome:CEL140:II:11527146:11533719:-1 gene:Y62F5A.1 11/11 A 
Y62F5A.1b ENSEMBL cdna:known chromosome:CEL140:II:11527163:11533719:-1 gene:Y62F5A.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004779 7/11 Cross Hyb Matching Probes None
SNAP00000004780 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11527166-11533716(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y62F5A.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB57912 Hypothetical protein Y62F5A.1a [Caenorhabditis elegans] ref|NP_496464.2| MeDiaTor family member (mdt-8) [Caenorhabditis elegans] 1.0E-138
blast CAB57913 Hypothetical protein Y62F5A.1b [Caenorhabditis elegans] ref|NP_496463.2| MeDiaTor family member (mdt-8) [Caenorhabditis elegans] 1.0E-132
blast CAB57913 Hypothetical protein Y62F5A.1b [Caenorhabditis elegans] ref|NP_496463.2| MeDiaTor family member (mdt-8) [Caenorhabditis elegans] 1.0E-130
blast CAB57912 Hypothetical protein Y62F5A.1a [Caenorhabditis elegans] ref|NP_496464.2| MeDiaTor family member (mdt-8) [Caenorhabditis elegans] 1.0E-130
Sequence
Target Sequence 
>C. ELEGANS:172520_X_AT
gaatcacgctctagttccagaatatttgagaacaaaaccgaatccagaaatggaaaacga
agaaggaatgcttgacggcgagagaagtgcgaagagtgcggatctggtggtcagacaaat
tgccgcgtacaacaaaaatatcgaaggattgattaatcatttgaacagtgttgataggat
gcacacggaagctgccattgaaaaaccaacatacaaccgagacgagacggcgaaaatcgt
aaaatcaatattaactggagaaggaatccgatctcaacgaacaatggctccagctcctcc
atcatcagccccaatgacgactgcaccaagttcaacaggaccatcgtcttcccagccgat
cagtggaaatcagccagaatatcaaggatcacagcttcgacagcaactcagtggaggtca
accacagacatcacaggctcatttgccaatgtattcacatcatcaacaaccacaatactc
acatcaacaacccatgaatccacaacatcattcaccaatgacaatgatggcgcctgggca
aatgataggacatccgatacaacaacaacgtccaccgatgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCACGCTCTAGTTCCAGAATAT 400 327 372 Antisense
GGTGGTCAGACAAATTGCCGCGTAC 497 499 477 Antisense
GGATGCACACGGAAGCTGCCATTGA 349 511 548 Antisense
GATCTCAACGAACAATGGCTCCAGC 409 419 641 Antisense
CCCAATGACGACTGCACCAAGTTCA 339 257 681 Antisense
AAGTTCAACAGGACCATCGTCTTCC 328 157 699 Antisense
GTCTTCCCAGCCGATCAGTGGAAAT 580 467 717 Antisense
GGATCACAGCTTCGACAGCAACTCA 477 511 757 Antisense
AACCACAGACATCACAGGCTCATTT 193 149 791 Antisense
GTATTCACATCATCAACAACCACAA 437 453 822 Antisense
TACAACAACAACGTCCACCGATGCA 572 641 929 Antisense
Sequence Source Affymetrix Proprietary Database