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[172519_x_at]

Description F52F10.1 /REP_DB=WormBase Gene ID /WP=CE19881 /TR=Q9UAR2 /GB=AAC69233.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 43      4grp_high_8_8 > 05      6grp_total > 10      4grp_total > 03      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1513
1 2 3 4 range
A 89.9
(-2.8)
P 		65.3
(-2.9)
P 		48.5
(-3)
P 		1538.8
(3)
P 		1490
B 180.3
(-1.2)
P 		46.1
(-2.9)
P 		40.9
(-3)
A 		515.6
(3)
P 		475
C 185
(-2.3)
P 		26.3
(-3)
A 		53.7
(-2.9)
P 		1397.8
(3)
P 		1372
avr 151.7
(-2.4) 		45.9
(-3) 		47.7
(-3) 		1150.7
(3) 		1105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 304
1 2 3 4 5 6 range
A 78.6
(-1.5)
P 		63.5
(-1.9)
P 		245.6
(3)
P 		44.1
(-2.5)
A 		138.5
(0.1)
P 		24.7
(-3)
A 		221
B 102.9
(1.1)
P 		128.1
(3)
P 		109.6
(1.6)
P 		82.5
(-0.5)
P 		49.5
(-3)
P 		55.1
(-2.6)
P 		79
C 43.8
(-2.3)
A 		313.9
(3)
P 		32.5
(-2.5)
A 		76.2
(-1.7)
P 		9.5
(-3)
A 		84.6
(-1.5)
P 		304
avr 75.1
(-1.9) 		168.5
(3) 		129.2
(0.9) 		67.6
(-2.3) 		65.8
(-2.4) 		54.8
(-3) 		114
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 228
1 2 3 4 range
A 32.7
(-2.4)
P 		14.2
(-3)
P 		12.7
(-3)
P 		225.3
(3)
P 		213
B 57.5
(-0.1)
P 		11.4
(-2.9)
P 		9.5
(-3)
A 		109.9
(3)
P 		100
C 61.2
(-1.6)
P 		7.5
(-3)
A 		18.7
(-2.7)
P 		235.7
(3)
P 		228
avr 50.5
(-1.7) 		11
(-3) 		13.6
(-2.9) 		190.3
(3) 		179

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 14.5
(-1.9)
P 		22.6
(-0.9)
P 		53.5
(3)
P 		11.2
(-2.3)
A 		41.8
(1.5)
P 		6
(-3)
A 		48
B 35.8
(1.2)
P 		42.6
(3)
P 		26.6
(-1.3)
P 		21.8
(-2.5)
P 		20.1
(-3)
P 		20.5
(-2.9)
P 		23
C 16.2
(-2.2)
A 		95.8
(3)
P 		8.3
(-2.7)
A 		15.3
(-2.2)
P 		3.1
(-3)
A 		28.3
(-1.4)
P 		93
avr 22.2
(-2) 		53.7
(3) 		29.5
(-0.9) 		16.1
(-3) 		21.7
(-2.1) 		18.3
(-2.6) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172519_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15047
Sequence Type Exemplar sequence
Representative Public ID F52F10.1 NCBI
Target Description F52F10.1 /REP_DB=WormBase Gene ID /WP=CE19881 /TR=Q9UAR2 /GB=AAC69233.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071044(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071044 NCBI Caenorhabditis elegans F52F10.1 (F52F10.1) mRNA, complete cds. 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_064783 2/11 Cross Hyb Matching Probes A 
NM_064742 1/11 Cross Hyb Matching Probes A 
GENEFINDER00000025938 2/11 Cross Hyb Matching Probes None
GENEFINDER00000013036 1/11 Cross Hyb Matching Probes None
GENEFINDER00000017793 1/11 Cross Hyb Matching Probes None
GENEFINDER00000018654 1/11 Cross Hyb Matching Probes None
GENEFINDER00000023088 1/11 Cross Hyb Matching Probes None
GENEFINDER00000026164 1/11 Cross Hyb Matching Probes None
GENEFINDER00000007384 2/11 Cross Hyb Matching Probes None
GENEFINDER00000016437 2/11 Cross Hyb Matching Probes None
GENEFINDER00000034279 2/11 Cross Hyb Matching Probes None
GENEFINDER00000010542 1/11 Cross Hyb Matching Probes None
ZK1225.8 2/11 Cross Hyb Matching Probes None
C29F9.11 1/11 Cross Hyb Matching Probes A 
Y50D7A.1 2/11 Cross Hyb Matching Probes A 
Y45F10B.7 4/11 Cross Hyb Matching Probes None
Y105C5A.18 5/11 Cross Hyb Matching Probes None
F52F10.1 6/11 Cross Hyb Matching Probes None
Y51A2D.7a 2/11 Cross Hyb Matching Probes A 
Y51A2D.7b 2/11 Cross Hyb Matching Probes A 
B0344.1 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Entrez Gene 186124 Entrez gene
SwissProt Q9UAR2 EMBL-EBI
WormBase CE36858 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69233 Hypothetical protein F52F10.1 [Caenorhabditis elegans] ref|NP_503445.2| F52F10.1 [Caenorhabditis elegans] 5.0E-31
blast T03862 hypothetical protein C49G7.9 - Caenorhabditis elegans 3.0E-17
Sequence
Target Sequence 
>C. ELEGANS:172519_X_AT
aaagttctatgagttggccgagcaagacgaataagtgccaaattttgcacactttctcat
tttcgcgaatctactttttcaatcataactcggtcagttttcaatttttcttagttttcc
aaaaattgacgttgggaaaatttttcaagaaaaaaataattcaaaaatttagtactgggg
ggagtggtttcctgggtctcctgaacattttttccactaaagttttgcggaatgtttttt
tgatacatagccaaaacttgttttttttctatacatctgtctgtgtacaagatatagccc
tcaactgtacgtctccttttcgggaattcaataatgagtacaatcctgtaataaaatttt
caaaaattcgttttcccgctgacatatcagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGTTCTATGAGTTGGCCGAGCAA 50 121 62 Antisense
GAGTTGGCCGAGCAAGACGAATAAG 106 397 72 Antisense
GCCAAATTTTGCACACTTTCTCATT 122 279 98 Antisense
ACTTTCTCATTTTCGCGAATCTACT 314 103 112 Antisense
ATCTACTTTTTCAATCATAACTCGG 19 33 130 Antisense
CATAACTCGGTCAGTTTTCAATTTT 624 213 145 Antisense
TTTCCTGGGTCTCCTGAACATTTTT 648 667 249 Antisense
GTTTTTTTTCTATACATCTGTCTGT 181 449 321 Antisense
AAGATATAGCCCTCAACTGTACGTC 454 147 350 Antisense
TGTACGTCTCCTTTTCGGGAATTCA 231 555 367 Antisense
TTCGTTTTCCCGCTGACATATCAGT 604 693 428 Antisense
Sequence Source Affymetrix Proprietary Database