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[172518_x_at]

Description Y73F8A.32 /REP_DB=WormBase Gene ID /WP=CE25597 /TR=Q9NA42 /GB=CAB60566.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 04      4grp_total > 25      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 109.9
(2.3)
P 		104
(-0.9)
A 		111.2
(3)
A 		100.2
(-3)
A 		11
B 41.3
(-3)
A 		113.3
(3)
A 		72
(-0.4)
A 		93.5
(1.4)
P 		72
C 65.8
(-1.5)
A 		53.8
(-3)
A 		63.4
(-1.8)
A 		100.4
(3)
M 		47
avr 72.3
(-3) 		90.4
(1.2) 		82.2
(-0.7) 		98
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 96.7
(3)
A 		32.7
(-2.6)
A 		82.7
(1.8)
A 		67.4
(0.4)
A 		75.5
(1.1)
A 		28.6
(-3)
A 		68
B 88.4
(2.3)
A 		97.8
(3)
A 		37.1
(-1.8)
A 		34.3
(-2)
A 		22.3
(-3)
A 		22.8
(-3)
A 		76
C 86.2
(1.6)
P 		97.5
(3)
A 		49.6
(-3)
A 		73.9
(0)
A 		53.5
(-2.5)
A 		51.5
(-2.8)
M 		48
avr 90.4
(3) 		76
(1.5) 		56.5
(-0.6) 		58.5
(-0.4) 		50.4
(-1.3) 		34.3
(-3) 		56
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 40
(3)
P 		22.6
(-1.1)
A 		29.1
(0.4)
A 		14.7
(-3)
A 		25
B 13.2
(-3)
A 		28
(3)
A 		16.7
(-1.6)
A 		19.9
(-0.3)
P 		15
C 21.8
(2.7)
A 		15.5
(-3)
A 		22.1
(3)
A 		16.9
(-1.7)
M 		7
avr 25
(3) 		22
(0.7) 		22.6
(1.2) 		17.2
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 17.8
(1.1)
A 		11.6
(-1.3)
A 		18
(1.2)
A 		17.1
(0.8)
A 		22.8
(3)
A 		7
(-3)
A 		16
B 30.7
(2.6)
A 		32.5
(3)
A 		9
(-2.9)
A 		9.1
(-2.9)
A 		9.1
(-2.9)
A 		8.5
(-3)
A 		24
C 32
(3)
P 		29.7
(2.3)
A 		12.6
(-3)
A 		14.9
(-2.3)
A 		17.3
(-1.5)
A 		17.3
(-1.5)
M 		19
avr 26.8
(3) 		24.6
(2.2) 		13.2
(-2.1) 		13.7
(-1.9) 		16.4
(-0.9) 		10.9
(-3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172518_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8571
Sequence Type Exemplar sequence
Representative Public ID Y73F8A.32 NCBI
Target Description Y73F8A.32 /REP_DB=WormBase Gene ID /WP=CE25597 /TR=Q9NA42 /GB=CAB60566.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070466
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000030912 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15514519:15514782:-1 None
Y73F8A.32 ENSEMBL cdna:known chromosome:CEL140:IV:15514519:15514767:-1 gene:Y73F8A.32 None
NM_070466 NCBI Caenorhabditis elegans Y73F8A.32 (Y73F8A.32) mRNA, complete cds. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000005100 2/11 Cross Hyb Matching Probes None
SNAP00000030834 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15514524-15514773(-) 100.0 100.0
chrIV:8400295-8400542(-) 94.22 94.22
Public Domain and Genome References
Gene Title
Ensembl Y73F8A.32
Entrez Gene 190688 Entrez gene
SwissProt Q9NA42 EMBL-EBI
WormBase CE36252 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60566 Hypothetical protein Y73F8A.32 [Caenorhabditis elegans] ref|NP_502867.2| Y73F8A.32 [Caenorhabditis elegans] 4.0E-29
Sequence
Target Sequence 
>C. ELEGANS:172518_X_AT
ttttgttttctctgtaagtttgctctgtgctgttccgtttttcaaattcccctgtatttc
ccgaaggtttccagctcatcttgggaagaagatggattcgacgccaggaccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTGTTTTCTCTGTAAGTTTGCTC 476 675 46 Antisense
GTTTTCTCTGTAAGTTTGCTCTGTG 328 449 50 Antisense
TTCTCTGTAAGTTTGCTCTGTGCTG 26 693 53 Antisense
TGTAAGTTTGCTCTGTGCTGTTCCG 286 559 58 Antisense
TCTGTGCTGTTCCGTTTTTCAAATT 212 609 69 Antisense
CTGTGCTGTTCCGTTTTTCAAATTC 649 239 70 Antisense
CTGTATTTCCCGAAGGTTTCCAGCT 603 213 97 Antisense
GAAGGTTTCCAGCTCATCTTGGGAA 529 333 108 Antisense
AGGTTTCCAGCTCATCTTGGGAAGA 377 57 110 Antisense
GTTTCCAGCTCATCTTGGGAAGAAG 39 451 112 Antisense
GAAGATGGATTCGACGCCAGGACCC 276 339 133 Antisense
Sequence Source Affymetrix Proprietary Database